Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PHA72_RS09270 Genome accession   NZ_CP116347
Coordinates   1889929..1890555 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain CM-TZ4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1884929..1895555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA72_RS09250 (PHA72_09245) - 1885323..1887083 (-) 1761 WP_059306086.1 AAA family ATPase -
  PHA72_RS09255 (PHA72_09250) matP 1887270..1887722 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  PHA72_RS09260 (PHA72_09255) ompA 1887792..1888847 (-) 1056 WP_020884794.1 porin OmpA -
  PHA72_RS09265 (PHA72_09260) sulA 1889202..1889711 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  PHA72_RS09270 (PHA72_09265) sxy/tfoX 1889929..1890555 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  PHA72_RS09275 (PHA72_09270) yccS 1890512..1892674 (-) 2163 WP_020884791.1 YccS family putative transporter -
  PHA72_RS09280 (PHA72_09275) - 1892694..1893140 (-) 447 WP_014169434.1 YccF domain-containing protein -
  PHA72_RS09285 (PHA72_09280) helD 1893264..1895318 (+) 2055 WP_020884789.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=776807 PHA72_RS09270 WP_020884792.1 1889929..1890555(+) (sxy/tfoX) [Enterobacter ludwigii strain CM-TZ4]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=776807 PHA72_RS09270 WP_020884792.1 1889929..1890555(+) (sxy/tfoX) [Enterobacter ludwigii strain CM-TZ4]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTTTTAACCCTGATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGGGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCATTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577