Detailed information NTG0776796

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: PFX98_RS13070
• Genome accession: NZ_CP116346
• Coordinates: 2812509..2813558 (+)
• Length: 349 a.a.
• NCBI ID: WP_285230938.1
• Uniprot ID: A0AA95NA16
• Organism: Paucibacter sediminis strain S2-9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2807509..2818558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PFX98_RS13040 (PFX98_13040)	prfA	2807552..2808634 (-)	1083	WP_285230933.1	peptide chain release factor 1	-
PFX98_RS13045 (PFX98_13045)	hemA	2808710..2810005 (-)	1296	WP_285230934.1	glutamyl-tRNA reductase	-
PFX98_RS13050 (PFX98_13050)	-	2810118..2810390 (+)	273	WP_285230935.1	hypothetical protein	-
PFX98_RS13055 (PFX98_13055)	miaB	2810380..2811738 (-)	1359	WP_285230936.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
PFX98_RS13060 (PFX98_13060)	-	2811802..2812143 (-)	342	WP_285230937.1	hypothetical protein	-
PFX98_RS13070 (PFX98_13070)	pilA	2812509..2813558 (+)	1050	WP_285230938.1	signal recognition particle-docking protein FtsY	Machinery gene
PFX98_RS13075 (PFX98_13075)	ffh	2813571..2814956 (-)	1386	WP_285230939.1	signal recognition particle protein	-
PFX98_RS13080 (PFX98_13080)	ccsA	2815036..2815827 (+)	792	WP_285230940.1	cytochrome c biogenesis protein CcsA	-
PFX98_RS13085 (PFX98_13085)	-	2815828..2816085 (+)	258	WP_285230941.1	PP0621 family protein	-
PFX98_RS13090 (PFX98_13090)	-	2816082..2817965 (+)	1884	WP_285230942.1	ATP-binding protein	-

Sequence

Protein

• Length: 349 a.a.
• Molecular weight: 37067.73 Da
• Isoelectric Point: 6.1688

>NTDB_id=776796 PFX98_RS13070 WP_285230938.1 2812509..2813558(+) (pilA) [Paucibacter sediminis strain S2-9]
MFSFFKKKFGATPAQEPVLVPVPPASSAAPDLVAPAAAPQSTQPVVAEAAPRKSWLEKLKQGLRKTGSSIAQVFTGTQID
DALYEELEAALLMADAGVKATEFLLEDLKRRVKEAKATEPSAVRGLLIESLTELLKPLEKALSVGEHQPTVVMVVGVNGA
GKTTSIGKLTRHLADAEQKVLLAAADTFRAAAREQLSVWADRTRVEIVSQEGGDPSAVTFDAVVAGRARGCDVVIADTAG
RLPTQLHLMEELKKIRRVIGKAQAEAPHEVLLVVDGNTGQNALTQVKAFDDALGLTGLIVTKLDGTAKGGVLAAIARERP
IPVYFIGVGEKLEDLQTFSAREFAQALLE

Nucleotide

• Length: 1050 bp

>NTDB_id=776796 PFX98_RS13070 WP_285230938.1 2812509..2813558(+) (pilA) [Paucibacter sediminis strain S2-9]
ATGTTCAGTTTCTTCAAGAAGAAGTTTGGCGCCACACCCGCTCAGGAGCCGGTTCTGGTGCCAGTGCCGCCGGCGAGTTC
CGCGGCACCCGACCTGGTGGCGCCAGCCGCTGCGCCGCAATCCACTCAGCCGGTGGTGGCCGAAGCCGCGCCGCGCAAGA
GCTGGCTGGAGAAACTCAAGCAGGGGCTGCGCAAGACGGGCTCCAGCATCGCCCAGGTCTTTACCGGCACGCAGATCGAC
GACGCGCTGTATGAGGAACTGGAGGCGGCGCTGCTGATGGCCGATGCGGGCGTGAAGGCCACCGAGTTCCTGCTCGAGGA
CCTGAAGCGGCGCGTCAAGGAGGCCAAGGCCACCGAGCCCTCGGCGGTGCGCGGCTTGCTGATCGAGTCGCTGACCGAGC
TGCTCAAGCCGCTCGAAAAGGCGCTGAGCGTGGGCGAGCATCAGCCCACCGTGGTGATGGTGGTGGGCGTGAACGGTGCC
GGCAAGACCACCAGCATCGGCAAGCTCACGCGCCACCTGGCGGACGCCGAACAGAAGGTGTTGCTGGCCGCGGCCGACAC
CTTCCGCGCCGCGGCGCGCGAGCAACTCTCGGTATGGGCCGATCGCACGCGGGTGGAGATCGTCAGCCAGGAGGGGGGCG
ATCCGTCGGCGGTGACCTTCGATGCGGTGGTGGCCGGCCGCGCGCGTGGCTGCGATGTGGTGATTGCCGACACCGCCGGC
CGCCTGCCCACCCAGCTGCATCTGATGGAAGAGCTGAAGAAGATACGCCGCGTGATCGGCAAGGCCCAGGCCGAGGCACC
GCACGAGGTGCTGCTGGTGGTGGATGGCAATACCGGCCAGAACGCGCTGACCCAGGTGAAGGCCTTCGACGATGCGCTGG
GCCTCACCGGCCTGATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGGGTGCTGGCGGCGATTGCACGCGAGCGGCCC
ATCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTGCAGACCTTCAGCGCGCGCGAGTTCGCGCAGGCGCT
GCTGGAGTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (67-131)

• SRP54-type protein, GTPase domain (SRP54) (149-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	54.655	95.415	0.521