Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PFX98_RS08215 Genome accession   NZ_CP116346
Coordinates   1809445..1810806 (-) Length   453 a.a.
NCBI ID   WP_285234705.1    Uniprot ID   A0AA95NEH0
Organism   Paucibacter sediminis strain S2-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1804445..1815806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFX98_RS08190 (PFX98_08190) - 1805145..1805675 (+) 531 WP_285234701.1 PEP-CTERM sorting domain-containing protein -
  PFX98_RS08195 (PFX98_08195) - 1805698..1806291 (+) 594 WP_285234702.1 PEP-CTERM sorting domain-containing protein -
  PFX98_RS08200 (PFX98_08200) - 1806260..1806676 (-) 417 WP_285234703.1 hypothetical protein -
  PFX98_RS08205 (PFX98_08205) - 1806835..1807572 (+) 738 WP_285235556.1 transporter substrate-binding domain-containing protein -
  PFX98_RS08210 (PFX98_08210) - 1807581..1809458 (+) 1878 WP_285234704.1 GGDEF domain-containing protein -
  PFX98_RS08215 (PFX98_08215) radA 1809445..1810806 (-) 1362 WP_285234705.1 DNA repair protein RadA Machinery gene
  PFX98_RS08220 (PFX98_08220) - 1810838..1811347 (-) 510 WP_285234706.1 DUF2505 domain-containing protein -
  PFX98_RS08225 (PFX98_08225) - 1811355..1812827 (-) 1473 WP_285234707.1 sodium:solute symporter -
  PFX98_RS08230 (PFX98_08230) - 1812995..1813624 (+) 630 WP_285234708.1 LysE family transporter -
  PFX98_RS08235 (PFX98_08235) - 1813692..1814576 (+) 885 WP_285234709.1 DMT family transporter -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47598.93 Da        Isoelectric Point: 7.1211

>NTDB_id=776789 PFX98_RS08215 WP_285234705.1 1809445..1810806(-) (radA) [Paucibacter sediminis strain S2-9]
MAKEKSIYTCSECGGTNAKWLGKCPHCGEWNTLVESVAEPSGGAKNRYQSLAKSQPVATLSEIEASDFERTPTGQDELDR
VLGGGIVAGGVVLIGGDPGIGKSTLLLQAVDALSQQLKVLYVTGEESGAQVAMRARRLGLAGTQVRVLAEISLEKILATI
EVEQPGFVVIDSIQTMYSEQLSSAPGSVAQVRECAAQLTRTAKAGGCAMVLVGHVTKEGALAGPRVLEHIVDTVLYFEGD
THSSFRLVRAIKNRFGAVNEIGVFAMTDKGLKGVTNPSAIFLSTHGEPVPGSCVLVTLEGTRPLLVELQALVDGGGPSPR
RLSVGLERDRLAMLLAVLHRHAGVMTNDQDVFVNAVGGVRISEPAADLAVMLAIQSSLRGKPLPKGFIAFGEVGLAGEVR
PAPRGQERLKEAAKLGFSVAVVPKANAPKKAIEGLTVHAVERIEEAIAIIRGL

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=776789 PFX98_RS08215 WP_285234705.1 1809445..1810806(-) (radA) [Paucibacter sediminis strain S2-9]
ATGGCGAAAGAGAAATCGATTTACACCTGCAGCGAATGCGGCGGCACCAATGCGAAGTGGCTGGGCAAGTGCCCGCATTG
CGGTGAGTGGAACACCCTGGTCGAGTCGGTGGCCGAGCCCAGCGGCGGCGCGAAAAACCGCTACCAGTCGCTGGCCAAGA
GCCAGCCGGTGGCGACGCTGAGCGAGATCGAGGCGAGCGACTTCGAGCGCACCCCCACCGGCCAGGACGAGTTGGACCGC
GTGCTGGGCGGCGGCATCGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCCACCCTGCTGCT
GCAGGCGGTGGATGCCTTGTCGCAGCAGCTGAAGGTCTTGTATGTCACCGGCGAGGAGTCGGGCGCACAGGTGGCGATGC
GCGCGCGCCGCCTCGGCCTGGCCGGCACCCAGGTGCGCGTGCTGGCCGAGATCAGCCTGGAGAAGATCCTCGCCACCATC
GAGGTCGAGCAGCCCGGCTTTGTGGTGATCGACTCGATCCAGACCATGTATTCCGAGCAGCTCAGCTCGGCGCCGGGCTC
GGTGGCCCAGGTGCGCGAATGCGCGGCCCAGCTGACGCGCACCGCCAAGGCCGGCGGCTGCGCCATGGTGCTGGTGGGCC
ATGTGACCAAGGAGGGTGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATCGTCGACACCGTGCTGTATTTCGAGGGCGAC
ACGCACAGCAGCTTCCGGCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGATCGGCGTGTTCGCGATGAC
CGACAAGGGGCTCAAGGGCGTGACCAACCCGAGCGCGATCTTTCTCTCCACCCACGGCGAGCCGGTGCCGGGCAGCTGCG
TGCTGGTGACGCTGGAGGGCACGCGCCCGCTGCTGGTGGAGCTGCAGGCCCTGGTGGACGGCGGCGGCCCGAGCCCGCGG
CGGCTCTCGGTGGGCCTGGAGCGCGACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGCCATGCCGGGGTGATGACCAA
CGACCAGGATGTGTTCGTCAACGCGGTGGGCGGGGTGCGCATCAGCGAGCCCGCGGCCGACCTGGCGGTGATGCTGGCGA
TCCAGAGCAGCCTGCGCGGCAAGCCCTTGCCCAAGGGCTTCATCGCCTTCGGCGAGGTGGGCCTGGCGGGCGAGGTGCGG
CCGGCGCCGCGCGGTCAGGAGCGCCTGAAGGAGGCCGCCAAGCTGGGCTTCAGCGTCGCCGTGGTGCCCAAGGCCAATGC
GCCCAAGAAGGCCATCGAGGGGCTCACCGTGCATGCGGTGGAGCGCATCGAGGAAGCCATCGCCATCATCAGGGGCCTCT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(357-448)

AAA domain (AAA_25)

(61-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.807

100

0.481
  radA Streptococcus mitis NCTC 12261

47.02

100

0.47
  radA Streptococcus pneumoniae Rx1

47.856

97.792

0.468
  radA Streptococcus pneumoniae D39

47.856

97.792

0.468
  radA Streptococcus pneumoniae R6

47.856

97.792

0.468
  radA Streptococcus pneumoniae TIGR4

47.856

97.792

0.468
  radA Streptococcus mitis SK321

47.964

97.572

0.468