Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QVM90_RS14670 Genome accession   NZ_CP128979
Coordinates   2820344..2820973 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TUM1881     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2815344..2825973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM90_RS14650 (QVM90_14650) ycbZ 2815734..2817494 (-) 1761 WP_097177949.1 Lon protease family protein -
  QVM90_RS14655 (QVM90_14655) matP 2817680..2818132 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QVM90_RS14660 (QVM90_14660) ompA 2818207..2819259 (-) 1053 WP_001307702.1 porin OmpA -
  QVM90_RS14665 (QVM90_14665) sulA 2819616..2820125 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QVM90_RS14670 (QVM90_14670) sxy/tfoX 2820344..2820973 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QVM90_RS14675 (QVM90_14675) yccS 2820936..2823098 (-) 2163 WP_000875061.1 YccS family putative transporter -
  QVM90_RS14680 (QVM90_14680) yccF 2823108..2823554 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QVM90_RS14685 (QVM90_14685) helD 2823677..2825731 (+) 2055 WP_264831221.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=776760 QVM90_RS14670 WP_000839153.1 2820344..2820973(+) (sxy/tfoX) [Escherichia coli strain TUM1881]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=776760 QVM90_RS14670 WP_000839153.1 2820344..2820973(+) (sxy/tfoX) [Escherichia coli strain TUM1881]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1