Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | PH604_RS03965 | Genome accession | NZ_CP116342 |
| Coordinates | 767285..769030 (+) | Length | 581 a.a. |
| NCBI ID | WP_047920976.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain SE690. | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 715414..776970 | 767285..769030 | within | 0 |
| IS/Tn | 769717..770718 | 767285..769030 | flank | 687 |
Gene organization within MGE regions
Location: 715414..776970
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PH604_RS03665 (PH604_03655) | zwf | 715459..716904 (+) | 1446 | WP_003688733.1 | glucose-6-phosphate dehydrogenase | - |
| PH604_RS03670 (PH604_03660) | pgl | 717055..717750 (+) | 696 | WP_003688731.1 | 6-phosphogluconolactonase | - |
| PH604_RS03675 (PH604_03665) | - | 717731..718717 (+) | 987 | WP_003688729.1 | glucokinase | - |
| PH604_RS03680 (PH604_03670) | hexR | 718766..719614 (+) | 849 | WP_003688727.1 | DNA-binding transcriptional regulator HexR | - |
| PH604_RS03685 (PH604_03675) | pgi | 719840..721486 (+) | 1647 | WP_003688725.1 | glucose-6-phosphate isomerase | - |
| PH604_RS11880 (PH604_03680) | - | 721703..722716 (+) | 1014 | WP_003688721.1 | lysozyme inhibitor LprI family protein | - |
| PH604_RS03695 (PH604_03685) | - | 722761..722901 (+) | 141 | WP_003688719.1 | hypothetical protein | - |
| PH604_RS03700 (PH604_03690) | - | 723083..723388 (+) | 306 | WP_225577434.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| PH604_RS11765 | - | 723472..723603 (-) | 132 | Protein_723 | DNA helicase UvrD | - |
| PH604_RS11885 | - | 723600..723709 (-) | 110 | Protein_724 | IS5/IS1182 family transposase | - |
| PH604_RS11770 | - | 723711..723872 (-) | 162 | Protein_725 | DNA helicase UvrD | - |
| PH604_RS03715 (PH604_03705) | - | 723851..724464 (-) | 614 | Protein_726 | hypothetical protein | - |
| PH604_RS11890 | - | 724549..724828 (+) | 280 | Protein_727 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PH604_RS03730 (PH604_03720) | - | 724836..725147 (+) | 312 | WP_003704000.1 | HigA family addiction module antitoxin | - |
| PH604_RS03735 (PH604_03725) | - | 725163..725492 (-) | 330 | WP_003691215.1 | hypothetical protein | - |
| PH604_RS03740 (PH604_03730) | - | 725591..727842 (-) | 2252 | Protein_730 | tail fiber protein | - |
| PH604_RS03745 (PH604_03735) | - | 727882..728445 (-) | 564 | WP_003695326.1 | phage tail protein | - |
| PH604_RS03750 (PH604_03740) | - | 728621..729091 (-) | 471 | Protein_732 | baseplate J/gp47 family protein | - |
| PH604_RS03755 (PH604_03745) | - | 729352..729678 (-) | 327 | WP_003688709.1 | GPW/gp25 family protein | - |
| PH604_RS11895 (PH604_03750) | - | 729675..729869 (-) | 195 | WP_010358072.1 | baseplate assembly protein | - |
| PH604_RS11900 (PH604_03755) | - | 729955..730254 (-) | 300 | Protein_735 | phage baseplate assembly protein V | - |
| PH604_RS03770 (PH604_03760) | - | 730360..730572 (-) | 213 | WP_002243493.1 | helix-turn-helix domain-containing protein | - |
| PH604_RS03775 (PH604_03765) | - | 730627..731280 (-) | 654 | WP_104691952.1 | IS1595 family transposase | - |
| PH604_RS03780 (PH604_03770) | - | 731302..731586 (-) | 285 | WP_003706224.1 | hypothetical protein | - |
| PH604_RS03785 (PH604_03775) | - | 731623..731886 (-) | 264 | WP_003688704.1 | hypothetical protein | - |
| PH604_RS03790 (PH604_03780) | - | 731906..732154 (-) | 249 | WP_003695320.1 | hypothetical protein | - |
| PH604_RS03795 (PH604_03785) | - | 732115..733185 (-) | 1071 | WP_003695318.1 | tyrosine-type recombinase/integrase | - |
| PH604_RS03800 (PH604_03790) | - | 733394..734173 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| PH604_RS03805 (PH604_11680) | - | 734765..734974 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| PH604_RS03810 (PH604_03795) | dinB | 735073..736131 (+) | 1059 | WP_041421282.1 | DNA polymerase IV | - |
| PH604_RS03815 (PH604_03800) | rep | 736201..738216 (-) | 2016 | WP_003704006.1 | DNA helicase Rep | - |
| PH604_RS03820 (PH604_03805) | aroD | 738236..739000 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| PH604_RS03825 (PH604_03810) | recA | 739200..740246 (+) | 1047 | WP_050164436.1 | recombinase RecA | Machinery gene |
| PH604_RS03830 (PH604_03815) | - | 740899..741234 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| PH604_RS03835 (PH604_03820) | dnaX | 741315..743438 (-) | 2124 | WP_003691207.1 | DNA polymerase III subunit gamma/tau | - |
| PH604_RS03840 (PH604_03825) | mutL | 743533..745497 (-) | 1965 | WP_003697109.1 | DNA mismatch repair endonuclease MutL | - |
| PH604_RS03845 (PH604_03830) | - | 745641..745826 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| PH604_RS03850 (PH604_03835) | - | 745837..746505 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| PH604_RS03855 (PH604_03840) | - | 746505..747218 (+) | 714 | WP_003697104.1 | tetratricopeptide repeat protein | - |
| PH604_RS03860 (PH604_03845) | purE | 747266..747751 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| PH604_RS03865 (PH604_03850) | - | 747963..748828 (-) | 866 | Protein_755 | transposase | - |
| PH604_RS03870 (PH604_03855) | - | 749145..749510 (+) | 366 | Protein_756 | transposase | - |
| PH604_RS03875 (PH604_03860) | - | 749517..750542 (+) | 1026 | Protein_757 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| PH604_RS03880 (PH604_03865) | - | 750737..751393 (-) | 657 | WP_003688682.1 | response regulator | - |
| PH604_RS03885 (PH604_03870) | - | 751390..753159 (-) | 1770 | WP_003695308.1 | histidine kinase | - |
| PH604_RS03890 (PH604_03875) | - | 753366..753980 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| PH604_RS03895 (PH604_03880) | - | 754143..754760 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| PH604_RS03900 (PH604_03885) | - | 754768..755631 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| PH604_RS03905 (PH604_03890) | - | 755644..756075 (-) | 432 | WP_272656725.1 | Spy/CpxP family protein refolding chaperone | - |
| PH604_RS03910 (PH604_03895) | rpe | 756221..756904 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| PH604_RS03915 (PH604_03900) | ruvB | 757149..758180 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| PH604_RS03920 (PH604_03905) | - | 758262..758570 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| PH604_RS03925 (PH604_03910) | - | 758989..760221 (-) | 1233 | WP_003688669.1 | multifunctional CCA addition/repair protein | - |
| PH604_RS03930 (PH604_03915) | - | 760300..761928 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| PH604_RS03935 (PH604_03920) | - | 762078..762452 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| PH604_RS03940 (PH604_03925) | - | 762501..764039 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| PH604_RS03945 (PH604_03930) | recR | 764106..764723 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| PH604_RS03950 (PH604_03935) | - | 764779..765057 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| PH604_RS03955 (PH604_03940) | - | 765283..766530 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| PH604_RS03960 (PH604_03945) | lolD | 766523..767218 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| PH604_RS03965 (PH604_03950) | recD | 767285..769030 (+) | 1746 | WP_047920976.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| PH604_RS03970 (PH604_03955) | - | 769102..769748 (-) | 647 | Protein_776 | methyltransferase | - |
| PH604_RS03975 (PH604_03960) | - | 769756..770718 (+) | 963 | WP_202838366.1 | IS110 family transposase | - |
| PH604_RS03980 (PH604_03965) | - | 770847..771306 (-) | 460 | Protein_778 | methyltransferase | - |
| PH604_RS03985 (PH604_03970) | lon | 771558..774020 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| PH604_RS03990 (PH604_03975) | - | 774202..774471 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| PH604_RS03995 (PH604_03980) | - | 774647..775081 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| PH604_RS04000 (PH604_03985) | - | 775074..776381 (-) | 1308 | WP_003688637.1 | homoserine dehydrogenase | - |
| PH604_RS04005 (PH604_03990) | - | 776577..776948 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63113.87 Da Isoelectric Point: 5.8825
>NTDB_id=776759 PH604_RS03965 WP_047920976.1 767285..769030(+) (recD) [Neisseria gonorrhoeae strain SE690.]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRSINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRSINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=776759 PH604_RS03965 WP_047920976.1 767285..769030(+) (recD) [Neisseria gonorrhoeae strain SE690.]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTTCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTTCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |