Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   MWM12_RS10345 Genome accession   NZ_AP025603
Coordinates   1866672..1867481 (-) Length   269 a.a.
NCBI ID   WP_024119553.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM1-7     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861672..1872481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM12_RS10315 (TthSNM17_20140) rsmI 1861833..1862627 (-) 795 WP_244341015.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MWM12_RS10320 (TthSNM17_20150) - 1862629..1863123 (-) 495 WP_244341016.1 TFIIB-type zinc ribbon-containing protein -
  MWM12_RS10325 (TthSNM17_20160) - 1863187..1863714 (-) 528 WP_011173971.1 inorganic diphosphatase -
  MWM12_RS10330 (TthSNM17_20170) - 1863747..1864373 (+) 627 WP_011173972.1 YcxB family protein -
  MWM12_RS10335 (TthSNM17_20180) comEA 1864346..1864654 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  MWM12_RS10340 (TthSNM17_20190) comA/comEC 1864651..1866684 (+) 2034 WP_244341018.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MWM12_RS10345 (TthSNM17_20200) spo0J 1866672..1867481 (-) 810 WP_024119553.1 ParB/RepB/Spo0J family partition protein Regulator
  MWM12_RS10350 (TthSNM17_20210) soj 1867465..1868214 (-) 750 WP_011173976.1 chromosome-partitioning ATPase Soj -
  MWM12_RS10355 (TthSNM17_20220) rsmG 1868208..1868957 (-) 750 WP_203971383.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29778.62 Da        Isoelectric Point: 10.1529

>NTDB_id=77675 MWM12_RS10345 WP_024119553.1 1866672..1867481(-) (spo0J) [Thermus thermophilus strain SNM1-7]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMASRRPAEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=77675 MWM12_RS10345 WP_024119553.1 1866672..1867481(-) (spo0J) [Thermus thermophilus strain SNM1-7]
GTGTCCAGGAAGCCTAGCGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTCGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAGCCCCTCCTCGTCCGGCCCCAGGGGGACGGCTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAGCGGGAGGACCTCTCCCCCGTGGAGGAGGCCCGGGGCTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTCCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTGAGGGAGCGCCTGG
CCATGGCTTCCAGGCGCCCCGCTGAGCCCTCCCCCCTCTCCCTGGAGCTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(26-112)

HTH domain found in ParB protein (HTH_ParB)

(162-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.2

92.937

0.383

Multiple sequence alignment