Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PH604_RS00270 Genome accession   NZ_CP116342
Coordinates   52706..55873 (-) Length   1055 a.a.
NCBI ID   WP_272656685.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SE690.     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47706..60873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH604_RS00245 (PH604_00245) - 47815..48378 (-) 564 WP_002214615.1 ComF family protein -
  PH604_RS00250 (PH604_00250) - 49559..49948 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  PH604_RS00260 (PH604_00260) - 50111..50490 (-) 380 Protein_49 VOC family protein -
  PH604_RS00265 (PH604_00265) carA 50544..51677 (-) 1134 WP_003687283.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  PH604_RS00270 (PH604_00270) pilC 52706..55873 (-) 3168 WP_272656685.1 PilC family type IV pilus tip adhesin Machinery gene
  PH604_RS00275 (PH604_00275) apbC 56722..57801 (-) 1080 WP_272656686.1 iron-sulfur cluster carrier protein ApbC -
  PH604_RS00285 (PH604_00285) - 58175..58684 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  PH604_RS00290 (PH604_00290) nadR 59025..59465 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  PH604_RS00295 (PH604_00295) hpaC 59580..60080 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -
  PH604_RS00300 (PH604_00300) murU 60096..60791 (+) 696 WP_003687300.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -

Sequence

Protein


Download         Length: 1055 a.a.        Molecular weight: 116152.44 Da        Isoelectric Point: 9.8297

>NTDB_id=776737 PH604_RS00270 WP_272656685.1 52706..55873(-) (pilC) [Neisseria gonorrhoeae strain SE690.]
MNKTLKRRVFRHTALYAAILMFSHTGGGGGQAQAQTYKYAIVMNERKQPEVKWESQYNQSALKDKGRERTFSHTSQKNTF
GITSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTDSLKGRANAAGWIRTTRPGLAGYAYTGIRCGHARDCPK
LTYKTRFSFDNPDLAKTGGRLDRHTESSRENSPIYKLKDYPWLGVSFNLGAEGTAKDGRSSSRLISSFDENNSNSNQNLV
YTTEGRDISLGNWQSESTAVAYYLNAKLHLLDKKKIKDITGKTVQLGVLKPSIDVKTQNTGFAGLLNFWSKWDIKDNGQI
PVKLGLPEVKAGRCTNKPNPNNNTKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPGR
HSLAALNARDIKSREPNFNSRQTVIRLPGGVYRIAPTRDRIVGLNGNDGKNDTFGIYKERLVTPDADEWAKVLLPWTVRY
YGNDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPIVAVDGYLATSANDGMVHLFKRNGTDQRGY
ELKLSYIPGTMPRQYFDNDTSALQDSDLAKELRTFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGFGGRGAY
ALDLSKIDSSNLTGVSMFDVQNDKNNNKNDSNRVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKQIASQENTTALYVYDL
ENTLGTPIAKIDVPGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSDSDSSKWSVSTIFEGGKPITSAPAVSRL
ADKRVVIFGTGSDLTEDDVLNTKEQYIYGIFDDDKPTVNVKVTNGTGGGLLEQVLSEENKILFLINNKASGGSADKGWVV
KLREGERVTVKPTVVLRTAFVTIRKYTGNDKCDAQTAILGINTADGGALTPRSARPIVPGDQVAQYSGHKKMNGKSIPIG
CMWKNSKTVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITG
PMCGIKRLSWREVFF

Nucleotide


Download         Length: 3168 bp        

>NTDB_id=776737 PH604_RS00270 WP_272656685.1 52706..55873(-) (pilC) [Neisseria gonorrhoeae strain SE690.]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGG
AGAGTCAATATAATCAATCAGCATTAAAGGACAAAGGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACACATTC
GGCATCACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCAC
AGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGTTTTGATACCGATAGTCTGAAAGGGCGCGCCAATGCCGCCGGTT
GGATTCGTACCACCCGGCCCGGGCTGGCAGGCTACGCCTACACCGGTATCCGTTGCGGACATGCCCGAGACTGTCCCAAA
CTTACCTATAAAACCCGATTTTCCTTCGATAATCCCGACTTGGCAAAAACAGGAGGCAGGCTGGATAGGCACACAGAGTC
AAGCCGCGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTA
CCGCCAAAGATGGCAGATCATCCAGCAGATTGATATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTC
TATACCACGGAAGGCCGCGATATTTCCTTGGGCAACTGGCAGAGCGAAAGTACCGCCGTGGCCTATTATCTGAACGCCAA
GCTGCACCTGCTGGACAAAAAAAAGATTAAAGATATCACCGGCAAAACAGTGCAGTTGGGTGTCTTGAAGCCGAGCATCG
ATGTGAAGACACAAAATACGGGGTTTGCCGGCTTGCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATT
CCGGTCAAGCTCGGCCTGCCGGAAGTCAAAGCCGGGCGCTGCACCAACAAACCGAACCCCAATAATAATACCAAAGCCCC
TTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTT
CCACCTACCCCGGCAGCTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGCCCGGCCCGGCCGG
CATTCCCTCGCCGCTTTGAATGCGCGGGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATT
GCCGGGCGGCGTGTACCGGATCGCCCCGACTCGCGACAGGATCGTGGGTTTGAATGGCAATGACGGCAAAAACGACACTT
TCGGCATCTACAAGGAAAGGTTAGTCACACCTGATGCCGACGAGTGGGCAAAAGTGCTGCTGCCTTGGACGGTCCGGTAT
TACGGTAATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAA
ATACCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGG
TCGACGGGTATTTGGCAACTTCTGCCAACGACGGGATGGTGCACCTGTTTAAAAGAAACGGCACAGACCAACGAGGCTAC
GAACTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCCAATATTTTGATAACGACACTTCCGCTCTCCAAGACTCCGA
CCTCGCCAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGC
GCCGCATTACAGATGACCAGGACAGGCAAAAACATTTCTTTATGTTTGGTGCGATGGGTTTTGGCGGCAGAGGCGCGTAT
GCCTTGGATTTAAGCAAAATCGACAGCAGCAACCTGACCGGCGTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAA
TAAGAATGACAGTAATCGCGTGAAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACG
CCGCCTTCCTCGCCTCCGGTTATGCGGCTAAACAAATTGCCAGCCAAGAAAATACAACCGCGCTGTATGTGTATGATTTG
GAAAACACCTTAGGTACGCCGATTGCAAAAATCGATGTGCCCGGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGA
TAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGATT
CCGATTCTAGTAAATGGTCTGTAAGCACTATTTTCGAAGGCGGGAAGCCGATTACCTCCGCGCCCGCCGTTTCCCGACTG
GCAGACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGACCGAAGATGATGTACTGAATACGAAAGAACAATATAT
TTACGGTATCTTTGACGACGATAAGCCGACGGTTAATGTAAAGGTAACAAACGGCACGGGAGGCGGGCTGCTCGAGCAAG
TGCTTAGCGAGGAAAATAAAATCTTGTTCCTGATAAATAATAAGGCATCCGGCGGATCGGCCGATAAAGGCTGGGTAGTG
AAATTGAGGGAAGGAGAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTGACCATCCGGAAATATAC
GGGTAATGACAAATGCGACGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCG
CGCGCCCGATTGTGCCGGGTGACCAGGTTGCGCAATATTCCGGCCATAAGAAAATGAACGGCAAGTCCATCCCCATAGGC
TGCATGTGGAAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGTTACCTGGACGA
AAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCG
CCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGC
CCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(537-867)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

68.545

100

0.692