Detailed information NTG0776734

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVM90_RS05415
• Genome accession: NZ_CP128979
• Coordinates: 1076230..1077222 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM1881
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1071230..1082222

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVM90_RS05385 (QVM90_05385)	ispD	1071291..1072001 (+)	711	WP_097177574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVM90_RS05390 (QVM90_05390)	ispF	1072001..1072480 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVM90_RS05395 (QVM90_05395)	truD	1072477..1073526 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QVM90_RS05400 (QVM90_05400)	surE	1073507..1074268 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVM90_RS05405 (QVM90_05405)	pcm	1074262..1074888 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVM90_RS05410 (QVM90_05410)	nlpD	1075073..1076167 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QVM90_RS05415 (QVM90_05415)	rpoS	1076230..1077222 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVM90_RS05420 (QVM90_05420)	ygbN	1077316..1078680 (-)	1365	WP_000104459.1	GntP family transporter	-
QVM90_RS05425 (QVM90_05425)	ygbM	1078769..1079545 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
QVM90_RS05430 (QVM90_05430)	ygbL	1079550..1080188 (-)	639	WP_001278994.1	aldolase	-
QVM90_RS05435 (QVM90_05435)	otnK	1080185..1081447 (-)	1263	WP_021553822.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=776734 QVM90_RS05415 WP_000081550.1 1076230..1077222(+) (rpoS) [Escherichia coli strain TUM1881]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=776734 QVM90_RS05415 WP_000081550.1 1076230..1077222(+) (rpoS) [Escherichia coli strain TUM1881]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACTTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715