Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PGH26_RS14195 Genome accession   NZ_CP116341
Coordinates   2810020..2810970 (-) Length   316 a.a.
NCBI ID   WP_323691687.1    Uniprot ID   -
Organism   Sporosarcina jeotgali strain B2O-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2805020..2815970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH26_RS14175 (PGH26_14190) - 2805166..2807112 (-) 1947 WP_323691683.1 FapA family protein -
  PGH26_RS14180 (PGH26_14195) - 2807319..2808296 (-) 978 WP_323691684.1 siderophore ABC transporter substrate-binding protein -
  PGH26_RS14185 (PGH26_14200) - 2808319..2809080 (-) 762 WP_323691685.1 ATP-binding cassette domain-containing protein -
  PGH26_RS14190 (PGH26_14205) - 2809077..2810027 (-) 951 WP_323691686.1 iron chelate uptake ABC transporter family permease subunit -
  PGH26_RS14195 (PGH26_14210) ceuB 2810020..2810970 (-) 951 WP_323691687.1 ABC transporter permease Machinery gene
  PGH26_RS14200 (PGH26_14215) - 2811233..2812135 (-) 903 WP_323691688.1 DUF6612 family protein -
  PGH26_RS14205 (PGH26_14220) - 2812355..2814073 (+) 1719 WP_323691689.1 ABC transporter ATP-binding protein -
  PGH26_RS14210 (PGH26_14225) - 2814100..2815812 (-) 1713 WP_323691690.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34932.26 Da        Isoelectric Point: 10.0070

>NTDB_id=776729 PGH26_RS14195 WP_323691687.1 2810020..2810970(-) (ceuB) [Sporosarcina jeotgali strain B2O-1]
MKKRYLMVALILLSLLSLFVGVSHISPKDLLDFRSEETEIFLISRLPRLLAILLAGAGMSITGLIMQQLSRNKFVSPTTA
GTLDAAKLGILVSMLLFTDTSTIEKMLVAFAFALGGTLLFMKILDQVKFKDAIFIPLVGLMFGNILSSITTFFAYKANVI
QNMSSWLQGDFSLIMKGRYELLYISIPVLIITYFYANRFTVAGMGEDFSKNLGLAYRRIVNIGLILVALITTTVVLTVGV
IPFLGLIIPNIVSIIKGDNLEKTLPHTAMLGAIFLLVCDILGRVIIYPYEISISLMVGVIGSAIFLYMLFRRKVYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=776729 PGH26_RS14195 WP_323691687.1 2810020..2810970(-) (ceuB) [Sporosarcina jeotgali strain B2O-1]
ATGAAGAAACGTTATTTGATGGTTGCGCTAATTCTCCTCTCGCTGCTTTCTTTGTTTGTGGGAGTGAGCCATATTTCACC
GAAAGACCTGCTGGACTTCCGCTCTGAGGAAACCGAAATTTTTCTCATTAGCCGGCTGCCGCGATTACTTGCGATTTTGC
TTGCAGGTGCAGGAATGAGTATTACGGGTCTGATTATGCAGCAGCTCAGCCGCAACAAATTCGTATCCCCGACAACGGCG
GGTACTTTGGATGCTGCTAAGCTTGGAATTCTCGTTTCAATGTTGTTATTTACGGATACATCAACCATCGAGAAAATGCT
CGTCGCATTTGCGTTTGCGCTAGGCGGCACCTTGCTGTTCATGAAAATCTTAGACCAAGTTAAATTTAAAGATGCTATTT
TCATCCCGCTTGTAGGTCTCATGTTCGGTAATATATTATCGTCGATCACTACGTTTTTTGCTTACAAAGCAAATGTGATT
CAAAACATGTCCTCCTGGCTTCAGGGAGATTTCTCCCTCATTATGAAAGGCCGTTACGAATTGTTATACATAAGTATCCC
CGTTCTCATCATTACCTATTTCTATGCAAACCGGTTTACGGTAGCGGGAATGGGGGAGGACTTCTCTAAAAATTTGGGGC
TGGCTTATCGAAGGATTGTGAACATCGGGCTGATACTAGTCGCATTAATTACGACGACTGTTGTTTTGACTGTCGGTGTT
ATTCCATTCCTAGGACTCATCATCCCTAATATTGTTTCCATTATTAAAGGAGACAATTTGGAAAAAACATTGCCGCATAC
AGCTATGCTAGGCGCGATTTTTTTACTCGTGTGTGACATTCTCGGACGGGTCATTATTTATCCTTATGAGATTTCAATTA
GCTTAATGGTAGGCGTTATCGGCAGCGCAATCTTCCTCTATATGCTGTTTAGGAGGAAAGTCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.716

99.051

0.522