Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QVM90_RS01900 Genome accession   NZ_CP128979
Coordinates   408747..409424 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain TUM1881     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403747..414424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM90_RS01885 (QVM90_01885) chiA 405114..407807 (+) 2694 WP_000773174.1 bifunctional chitinase/lysozyme -
  QVM90_RS01890 (QVM90_01890) bfd 407976..408170 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  QVM90_RS01895 (QVM90_01895) bfr 408242..408718 (+) 477 WP_000675504.1 bacterioferritin -
  QVM90_RS01900 (QVM90_01900) pilD 408747..409424 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  QVM90_RS01905 (QVM90_01905) gspM 409424..409885 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  QVM90_RS01910 (QVM90_01910) gspL 409882..411045 (-) 1164 WP_001115235.1 type II secretion system protein GspL -
  QVM90_RS01915 (QVM90_01915) gspK 411060..412043 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  QVM90_RS01920 (QVM90_01920) gspJ 412036..412623 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  QVM90_RS01925 (QVM90_01925) gspI 412616..412993 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  QVM90_RS01930 (QVM90_01930) gspH 412990..413499 (-) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  QVM90_RS01935 (QVM90_01935) gspG 413507..413944 (-) 438 WP_001202880.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=776722 QVM90_RS01900 WP_000178161.1 408747..409424(-) (pilD) [Escherichia coli strain TUM1881]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=776722 QVM90_RS01900 WP_000178161.1 408747..409424(-) (pilD) [Escherichia coli strain TUM1881]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378