Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QVM91_RS20195 Genome accession   NZ_CP128970
Coordinates   4123988..4124593 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain TUM1886     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4118988..4129593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM91_RS20175 (QVM91_20175) aes 4119129..4120088 (+) 960 WP_000764314.1 acetyl esterase -
  QVM91_RS20180 (QVM91_20180) hemH 4120085..4121047 (-) 963 WP_001250117.1 ferrochelatase -
  QVM91_RS20185 (QVM91_20185) adk 4121179..4121823 (-) 645 WP_001220233.1 adenylate kinase -
  QVM91_RS20190 (QVM91_20190) htpG 4122004..4123878 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QVM91_RS20195 (QVM91_20195) recR 4123988..4124593 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QVM91_RS20200 (QVM91_20200) ybaB 4124593..4124922 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QVM91_RS20205 (QVM91_20205) dnaX 4124975..4126906 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QVM91_RS20210 (QVM91_20210) apt 4127035..4127586 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QVM91_RS20215 (QVM91_20215) ybaN 4127733..4128110 (-) 378 WP_001188905.1 DUF454 family protein -
  QVM91_RS20220 (QVM91_20220) priC 4128180..4128707 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  QVM91_RS20225 (QVM91_20225) rsmS 4128721..4128885 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=776685 QVM91_RS20195 WP_001195025.1 4123988..4124593(-) (recR) [Escherichia coli strain TUM1886]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=776685 QVM91_RS20195 WP_001195025.1 4123988..4124593(-) (recR) [Escherichia coli strain TUM1886]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443