Detailed information NTG0776649

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVM91_RS06125
• Genome accession: NZ_CP128970
• Coordinates: 1253792..1254784 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM1886
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1248792..1259784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVM91_RS06095 (QVM91_06095)	ispD	1248853..1249563 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVM91_RS06100 (QVM91_06100)	ispF	1249563..1250042 (+)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVM91_RS06105 (QVM91_06105)	truD	1250039..1251088 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QVM91_RS06110 (QVM91_06110)	surE	1251069..1251830 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVM91_RS06115 (QVM91_06115)	pcm	1251824..1252450 (+)	627	WP_264831675.1	protein-L-isoaspartate O-methyltransferase	-
QVM91_RS06120 (QVM91_06120)	nlpD	1252635..1253729 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QVM91_RS06125 (QVM91_06125)	rpoS	1253792..1254784 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVM91_RS06130 (QVM91_06130)	-	1254905..1255312 (-)	408	WP_001521151.1	MarR family transcriptional regulator	-
QVM91_RS06135 (QVM91_06135)	-	1255459..1256052 (+)	594	WP_001521150.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QVM91_RS06140 (QVM91_06140)	-	1256052..1257479 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QVM91_RS06145 (QVM91_06145)	-	1257490..1257726 (+)	237	WP_098716890.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QVM91_RS06150 (QVM91_06150)	ygbN	1257765..1259129 (-)	1365	WP_000104455.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=776649 QVM91_RS06125 WP_000081550.1 1253792..1254784(+) (rpoS) [Escherichia coli strain TUM1886]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=776649 QVM91_RS06125 WP_000081550.1 1253792..1254784(+) (rpoS) [Escherichia coli strain TUM1886]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715