Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PJW01_RS25500 Genome accession   NZ_CP116325
Coordinates   4898573..4898857 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain BLB1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4893573..4903857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW01_RS25465 (PJW01_25465) tmk 4893765..4894391 (+) 627 WP_000677214.1 dTMP kinase -
  PJW01_RS25470 (PJW01_25470) holB 4894427..4895410 (+) 984 WP_000169563.1 DNA polymerase III subunit delta' -
  PJW01_RS25475 (PJW01_25475) - 4895416..4896243 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  PJW01_RS25480 (PJW01_25480) yabA 4896258..4896608 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  PJW01_RS25485 (PJW01_25485) - 4896691..4897431 (+) 741 WP_001055369.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PJW01_RS25490 (PJW01_25490) - 4897418..4897708 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  PJW01_RS25495 (PJW01_25495) rsmI 4897677..4898552 (+) 876 WP_000267822.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PJW01_RS25500 (PJW01_25500) abrB 4898573..4898857 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PJW01_RS25505 (PJW01_25505) metG 4899316..4901325 (+) 2010 WP_071686415.1 methionine--tRNA ligase -
  PJW01_RS25510 (PJW01_25510) - 4901492..4902259 (+) 768 WP_000895843.1 TatD family hydrolase -
  PJW01_RS25515 (PJW01_25515) rnmV 4902474..4903031 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=776638 PJW01_RS25500 WP_000843036.1 4898573..4898857(-) (abrB) [Bacillus thuringiensis strain BLB1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=776638 PJW01_RS25500 WP_000843036.1 4898573..4898857(-) (abrB) [Bacillus thuringiensis strain BLB1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851