Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QVM92_RS17335 Genome accession   NZ_CP128963
Coordinates   3535760..3536365 (-) Length   201 a.a.
NCBI ID   WP_264831765.1    Uniprot ID   -
Organism   Escherichia coli strain TUM1887     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3530760..3541365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM92_RS17315 (QVM92_17315) aes 3530797..3531756 (+) 960 WP_000801832.1 acetyl esterase -
  QVM92_RS17320 (QVM92_17320) hemH 3531753..3532715 (-) 963 WP_001250088.1 ferrochelatase -
  QVM92_RS17325 (QVM92_17325) adk 3532951..3533595 (-) 645 WP_001220233.1 adenylate kinase -
  QVM92_RS17330 (QVM92_17330) htpG 3533776..3535650 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  QVM92_RS17335 (QVM92_17335) recR 3535760..3536365 (-) 606 WP_264831765.1 recombination mediator RecR Machinery gene
  QVM92_RS17340 (QVM92_17340) ybaB 3536365..3536694 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QVM92_RS17345 (QVM92_17345) dnaX 3536747..3538678 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QVM92_RS17350 (QVM92_17350) apt 3538807..3539358 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QVM92_RS17355 (QVM92_17355) ybaN 3539511..3539888 (-) 378 WP_001188905.1 DUF454 family protein -
  QVM92_RS17360 (QVM92_17360) priC 3539958..3540485 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QVM92_RS17365 (QVM92_17365) rsmS 3540499..3540660 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QVM92_RS17370 (QVM92_17370) - 3540713..3540811 (-) 99 Protein_3404 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21977.03 Da        Isoelectric Point: 4.9097

>NTDB_id=776599 QVM92_RS17335 WP_264831765.1 3535760..3536365(-) (recR) [Escherichia coli strain TUM1887]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEICNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=776599 QVM92_RS17335 WP_264831765.1 3535760..3536365(-) (recR) [Escherichia coli strain TUM1887]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAATCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443