Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PJW02_RS23795 Genome accession   NZ_CP116313
Coordinates   4605855..4606178 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain Lip     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4600855..4611178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW02_RS23780 (PJW02_23780) - 4601369..4602736 (-) 1368 WP_000028382.1 aldehyde dehydrogenase -
  PJW02_RS23785 (PJW02_23785) inhA1 4602908..4605298 (-) 2391 WP_001035947.1 M6 family metalloprotease immune inhibitor InhA1 -
  PJW02_RS23790 (PJW02_23790) - 4605641..4605775 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  PJW02_RS23795 (PJW02_23795) sinR 4605855..4606178 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  PJW02_RS23800 (PJW02_23800) calY 4606252..4606845 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  PJW02_RS23805 (PJW02_23805) - 4607233..4608075 (-) 843 WP_015382237.1 DUF4047 domain-containing protein -
  PJW02_RS23810 (PJW02_23810) - 4608210..4608797 (-) 588 WP_000172854.1 CalY family protein -
  PJW02_RS23815 (PJW02_23815) sipW 4608858..4609427 (-) 570 WP_000767792.1 signal peptidase I SipW -
  PJW02_RS23820 (PJW02_23820) - 4609619..4610905 (-) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=776580 PJW02_RS23795 WP_000578885.1 4605855..4606178(+) (sinR) [Bacillus thuringiensis strain Lip]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=776580 PJW02_RS23795 WP_000578885.1 4605855..4606178(+) (sinR) [Bacillus thuringiensis strain Lip]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692