Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PJW02_RS22465 Genome accession   NZ_CP116313
Coordinates   4361393..4361995 (+) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus thuringiensis strain Lip     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4356393..4366995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW02_RS22425 (PJW02_22425) gpsB 4356711..4357046 (-) 336 WP_000622431.1 cell division regulator GpsB -
  PJW02_RS22430 (PJW02_22430) - 4357145..4357699 (-) 555 WP_000862914.1 DUF1273 domain-containing protein -
  PJW02_RS22435 (PJW02_22435) - 4357756..4358184 (-) 429 WP_000546268.1 CotD family spore coat protein -
  PJW02_RS22440 (PJW02_22440) - 4358340..4358849 (-) 510 WP_000487624.1 YppG family protein -
  PJW02_RS22445 (PJW02_22445) - 4359027..4359218 (+) 192 WP_000242652.1 YppF family protein -
  PJW02_RS22450 (PJW02_22450) - 4359245..4359589 (-) 345 WP_000786942.1 YppE family protein -
  PJW02_RS22455 (PJW02_22455) - 4359605..4359847 (-) 243 WP_001252036.1 hypothetical protein -
  PJW02_RS32715 - 4359933..4360112 (+) 180 WP_001987054.1 hypothetical protein -
  PJW02_RS22460 (PJW02_22460) - 4360264..4361289 (-) 1026 WP_000495649.1 DUF2515 domain-containing protein -
  PJW02_RS22465 (PJW02_22465) recU 4361393..4361995 (+) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  PJW02_RS22470 (PJW02_22470) - 4362062..4364761 (+) 2700 WP_001283099.1 PBP1A family penicillin-binding protein -
  PJW02_RS22475 (PJW02_22475) - 4364788..4365306 (-) 519 WP_000442652.1 YpoC family protein -
  PJW02_RS22480 (PJW02_22480) nth 4365310..4365957 (-) 648 WP_000933034.1 endonuclease III -
  PJW02_RS22485 (PJW02_22485) dnaD 4365973..4366680 (-) 708 WP_000728552.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=776578 PJW02_RS22465 WP_000155598.1 4361393..4361995(+) (recU) [Bacillus thuringiensis strain Lip]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=776578 PJW02_RS22465 WP_000155598.1 4361393..4361995(+) (recU) [Bacillus thuringiensis strain Lip]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACCAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTCGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635