Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PJW02_RS10325 Genome accession   NZ_CP116313
Coordinates   1917144..1917602 (-) Length   152 a.a.
NCBI ID   WP_000804862.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain Lip     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912144..1922602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW02_RS10300 (PJW02_10300) - 1912298..1913839 (-) 1542 WP_000449900.1 MDR family MFS transporter -
  PJW02_RS10305 (PJW02_10305) - 1914253..1914753 (+) 501 WP_000708120.1 hypothetical protein -
  PJW02_RS10310 (PJW02_10310) - 1914785..1915018 (-) 234 WP_000939448.1 SPP1 phage holin family protein -
  PJW02_RS10315 (PJW02_10315) - 1915182..1915835 (+) 654 WP_000680811.1 diguanylate cyclase domain-containing protein -
  PJW02_RS10320 (PJW02_10320) - 1916450..1917112 (+) 663 WP_000922482.1 YkyA family protein -
  PJW02_RS10325 (PJW02_10325) kre 1917144..1917602 (-) 459 WP_000804862.1 YkyB family protein Regulator
  PJW02_RS10330 (PJW02_10330) - 1917744..1919318 (+) 1575 WP_003285197.1 Ppx/GppA family phosphatase -
  PJW02_RS10335 (PJW02_10335) - 1919427..1921535 (+) 2109 WP_000421682.1 polyphosphate kinase -
  PJW02_RS10340 (PJW02_10340) - 1921696..1921932 (-) 237 WP_000283738.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=776569 PJW02_RS10325 WP_000804862.1 1917144..1917602(-) (kre) [Bacillus thuringiensis strain Lip]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTIQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=776569 PJW02_RS10325 WP_000804862.1 1917144..1917602(-) (kre) [Bacillus thuringiensis strain Lip]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTGGCAAAAAAAACAATTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487