Detailed information NTG0776568

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVM92_RS05655
• Genome accession: NZ_CP128963
• Coordinates: 1145350..1146342 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM1887
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1140350..1151342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVM92_RS05625 (QVM92_05625)	ispD	1140411..1141121 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVM92_RS05630 (QVM92_05630)	ispF	1141121..1141600 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVM92_RS05635 (QVM92_05635)	truD	1141597..1142646 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QVM92_RS05640 (QVM92_05640)	surE	1142627..1143388 (+)	762	WP_001447327.1	5'/3'-nucleotidase SurE	-
QVM92_RS05645 (QVM92_05645)	pcm	1143382..1144008 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVM92_RS05650 (QVM92_05650)	nlpD	1144193..1145287 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QVM92_RS05655 (QVM92_05655)	rpoS	1145350..1146342 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVM92_RS05660 (QVM92_05660)	-	1146463..1146870 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
QVM92_RS05665 (QVM92_05665)	-	1147017..1147610 (+)	594	WP_000767716.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QVM92_RS05670 (QVM92_05670)	-	1147610..1149037 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QVM92_RS05675 (QVM92_05675)	-	1149048..1149284 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QVM92_RS05680 (QVM92_05680)	ygbN	1149323..1150687 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=776568 QVM92_RS05655 WP_000081550.1 1145350..1146342(+) (rpoS) [Escherichia coli strain TUM1887]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=776568 QVM92_RS05655 WP_000081550.1 1145350..1146342(+) (rpoS) [Escherichia coli strain TUM1887]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715