Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PJW02_RS09380 Genome accession   NZ_CP116313
Coordinates   1743273..1744067 (+) Length   264 a.a.
NCBI ID   WP_021727703.1    Uniprot ID   A0A9X3FF97
Organism   Bacillus thuringiensis strain Lip     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1738273..1749067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW02_RS09365 (PJW02_09365) argR 1739112..1739561 (+) 450 WP_001032580.1 arginine repressor ArgR -
  PJW02_RS09370 (PJW02_09370) recN 1739826..1741565 (+) 1740 WP_000947764.1 DNA repair protein RecN Machinery gene
  PJW02_RS09375 (PJW02_09375) spoIVB 1741684..1742982 (+) 1299 WP_002101312.1 SpoIVB peptidase -
  PJW02_RS09380 (PJW02_09380) spo0A 1743273..1744067 (+) 795 WP_021727703.1 sporulation transcription factor Spo0A Regulator
  PJW02_RS09385 (PJW02_09385) - 1744320..1744883 (+) 564 WP_000428227.1 PRK06770 family protein -
  PJW02_RS09390 (PJW02_09390) - 1745124..1745270 (-) 147 WP_001247671.1 YycC family protein -
  PJW02_RS09395 (PJW02_09395) - 1745321..1746049 (+) 729 WP_000172580.1 glycerophosphodiester phosphodiesterase -
  PJW02_RS09400 (PJW02_09400) - 1746099..1746332 (-) 234 WP_001190210.1 DUF2627 domain-containing protein -
  PJW02_RS09405 (PJW02_09405) - 1746470..1748542 (+) 2073 WP_000810974.1 sigma-54 interaction domain-containing protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29445.20 Da        Isoelectric Point: 7.1175

>NTDB_id=776567 PJW02_RS09380 WP_021727703.1 1743273..1744067(+) (spo0A) [Bacillus thuringiensis strain Lip]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANTMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=776567 PJW02_RS09380 WP_021727703.1 1743273..1744067(+) (spo0A) [Bacillus thuringiensis strain Lip]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAGAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTTGGCCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACACTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCCACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818