Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QVM92_RS01985 Genome accession   NZ_CP128963
Coordinates   425808..426275 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain TUM1887     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420808..431275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM92_RS01960 (QVM92_01960) rpsG 420949..421419 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  QVM92_RS01965 (QVM92_01965) fusA 421516..423630 (+) 2115 WP_000124700.1 elongation factor G -
  QVM92_RS01970 (QVM92_01970) tuf 423701..424885 (+) 1185 WP_000031783.1 elongation factor Tu -
  QVM92_RS01975 (QVM92_01975) bfd 425068..425262 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QVM92_RS01980 (QVM92_01980) bfr 425335..425811 (+) 477 WP_000675515.1 bacterioferritin -
  QVM92_RS01985 (QVM92_01985) pilD 425808..426275 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  QVM92_RS01990 (QVM92_01990) rpsJ 426654..426965 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  QVM92_RS01995 (QVM92_01995) rplC 426998..427627 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  QVM92_RS02000 (QVM92_02000) rplD 427638..428243 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  QVM92_RS02005 (QVM92_02005) rplW 428240..428542 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  QVM92_RS02010 (QVM92_02010) rplB 428560..429381 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  QVM92_RS02015 (QVM92_02015) rpsS 429398..429676 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  QVM92_RS02020 (QVM92_02020) rplV 429691..430023 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  QVM92_RS02025 (QVM92_02025) rpsC 430041..430742 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  QVM92_RS02030 (QVM92_02030) rplP 430755..431165 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=776556 QVM92_RS01985 WP_000340171.1 425808..426275(-) (pilD) [Escherichia coli strain TUM1887]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=776556 QVM92_RS01985 WP_000340171.1 425808..426275(-) (pilD) [Escherichia coli strain TUM1887]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361