Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PJW02_RS02260 Genome accession   NZ_CP116313
Coordinates   413041..414168 (-) Length   375 a.a.
NCBI ID   WP_000470745.1    Uniprot ID   A0A9W5QA17
Organism   Bacillus thuringiensis strain Lip     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 408041..419168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW02_RS02250 (PJW02_02250) gyrA 408520..410991 (-) 2472 WP_001282864.1 DNA gyrase subunit A -
  PJW02_RS02255 (PJW02_02255) gyrB 411080..413002 (-) 1923 WP_000435982.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  PJW02_RS02260 (PJW02_02260) recF 413041..414168 (-) 1128 WP_000470745.1 DNA replication/repair protein RecF Machinery gene
  PJW02_RS02265 (PJW02_02265) yaaA 414181..414393 (-) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  PJW02_RS02270 (PJW02_02270) dnaN 414521..415666 (-) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  PJW02_RS02275 (PJW02_02275) dnaA 415846..417186 (-) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  PJW02_RS02280 (PJW02_02280) rpmH 417751..417885 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  PJW02_RS02285 (PJW02_02285) rnpA 417962..418309 (+) 348 WP_000726621.1 ribonuclease P protein component -
  PJW02_RS02290 (PJW02_02290) spoIIIJ 418362..419129 (+) 768 WP_000727737.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.67 Da        Isoelectric Point: 6.6001

>NTDB_id=776548 PJW02_RS02260 WP_000470745.1 413041..414168(-) (recF) [Bacillus thuringiensis strain Lip]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=776548 PJW02_RS02260 WP_000470745.1 413041..414168(-) (recF) [Bacillus thuringiensis strain Lip]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAGGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653