Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PJW02_RS02060 Genome accession   NZ_CP116313
Coordinates   376574..376858 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain Lip     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 371574..381858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJW02_RS02045 (PJW02_02045) rnmV 372400..372957 (-) 558 WP_000692835.1 ribonuclease M5 -
  PJW02_RS02050 (PJW02_02050) - 373172..373939 (-) 768 WP_000895843.1 TatD family hydrolase -
  PJW02_RS02055 (PJW02_02055) metG 374106..376088 (-) 1983 WP_000134142.1 methionine--tRNA ligase -
  PJW02_RS02060 (PJW02_02060) abrB 376574..376858 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PJW02_RS02065 (PJW02_02065) rsmI 376879..377754 (-) 876 WP_000267822.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  PJW02_RS02070 (PJW02_02070) - 377723..378013 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  PJW02_RS02075 (PJW02_02075) - 378000..378740 (-) 741 WP_001055369.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  PJW02_RS02080 (PJW02_02080) yabA 378823..379173 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  PJW02_RS02085 (PJW02_02085) - 379188..380015 (-) 828 WP_000272429.1 PSP1 domain-containing protein -
  PJW02_RS02090 (PJW02_02090) holB 380021..381004 (-) 984 WP_000169563.1 DNA polymerase III subunit delta' -
  PJW02_RS02095 (PJW02_02095) tmk 381040..381666 (-) 627 WP_000677214.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=776546 PJW02_RS02060 WP_000843036.1 376574..376858(+) (abrB) [Bacillus thuringiensis strain Lip]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=776546 PJW02_RS02060 WP_000843036.1 376574..376858(+) (abrB) [Bacillus thuringiensis strain Lip]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851