Detailed information NTG0776536

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PJW04_RS16370
• Genome accession: NZ_CP116305
• Coordinates: 3735101..3736495 (+)
• Length: 464 a.a.
• NCBI ID: WP_008575092.1
• Uniprot ID: -
• Organism: Xanthomonas perforans strain GEV872
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3730101..3741495

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PJW04_RS16350 (PJW04_16350)	-	3730344..3730688 (-)	345	WP_008577787.1	ribbon-helix-helix domain-containing protein	-
PJW04_RS16355 (PJW04_16355)	sucD	3730859..3731734 (-)	876	WP_029820064.1	succinate--CoA ligase subunit alpha	-
PJW04_RS16360 (PJW04_16360)	sucC	3731759..3732928 (-)	1170	WP_007965356.1	ADP-forming succinate--CoA ligase subunit beta	-
PJW04_RS16365 (PJW04_16365)	-	3733160..3734773 (+)	1614	WP_033478933.1	PAS domain-containing sensor histidine kinase	-
PJW04_RS16370 (PJW04_16370)	pilR	3735101..3736495 (+)	1395	WP_008575092.1	sigma-54 dependent transcriptional regulator	Regulator
PJW04_RS16375 (PJW04_16375)	-	3737800..3738072 (-)	273	Protein_3202	type IV-A pilus assembly ATPase PilB	-
PJW04_RS16385 (PJW04_16385)	pilB	3739274..3740740 (-)	1467	Protein_3204	type IV-A pilus assembly ATPase PilB	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50239.61 Da
• Isoelectric Point: 6.5716

>NTDB_id=776536 PJW04_RS16370 WP_008575092.1 3735101..3736495(+) (pilR) [Xanthomonas perforans strain GEV872]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAPGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLSDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAVPNGGAA
AEQREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1395 bp

>NTDB_id=776536 PJW04_RS16370 WP_008575092.1 3735101..3736495(+) (pilR) [Xanthomonas perforans strain GEV872]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCTTGCGCATCAGCACCGCGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCCCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGAGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGATCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGA
CGCATTGAATCACTACGGCTTCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCCAACGGAGGCGCCGCG
GCCGAACAGCGCGAAGCCGTCGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGC
TGCGTTATAAGTTGAAGAAGCTGGGGATGGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.283	99.784	0.631
pilR	Acinetobacter baumannii strain A118	49.353	100	0.494