Detailed information NTG0776536

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVM93_RS20475
• Genome accession: NZ_CP128958
• Coordinates: 4319556..4320548 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM2330
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4314556..4325548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVM93_RS20445 (QVM93_20445)	ispD	4314617..4315327 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVM93_RS20450 (QVM93_20450)	ispF	4315327..4315806 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVM93_RS20455 (QVM93_20455)	truD	4315803..4316852 (+)	1050	WP_264822831.1	tRNA pseudouridine(13) synthase TruD	-
QVM93_RS20460 (QVM93_20460)	surE	4316833..4317594 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVM93_RS20465 (QVM93_20465)	pcm	4317588..4318214 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVM93_RS20470 (QVM93_20470)	nlpD	4318399..4319493 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QVM93_RS20475 (QVM93_20475)	rpoS	4319556..4320548 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVM93_RS20480 (QVM93_20480)	-	4320669..4321076 (-)	408	WP_001208066.1	MarR family transcriptional regulator	-
QVM93_RS20485 (QVM93_20485)	-	4321223..4321816 (+)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QVM93_RS20490 (QVM93_20490)	-	4321816..4323243 (+)	1428	WP_001551547.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QVM93_RS20495 (QVM93_20495)	-	4323254..4323490 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QVM93_RS20500 (QVM93_20500)	ygbN	4323529..4324893 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=776536 QVM93_RS20475 WP_000081550.1 4319556..4320548(+) (rpoS) [Escherichia coli strain TUM2330]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=776536 QVM93_RS20475 WP_000081550.1 4319556..4320548(+) (rpoS) [Escherichia coli strain TUM2330]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715