Detailed information NTG0776500

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: PJW05_RS05110
• Genome accession: NZ_CP116304
• Coordinates: 1103140..1104504 (+)
• Length: 454 a.a.
• NCBI ID: WP_271410658.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Q1-7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1098140..1109504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PJW05_RS05090	-	1099758..1100237 (+)	480	WP_271410654.1	DUF934 domain-containing protein	-
PJW05_RS05095	-	1100522..1102084 (+)	1563	WP_271410655.1	TerC family protein	-
PJW05_RS05100	mscL	1102182..1102592 (-)	411	WP_271410656.1	large-conductance mechanosensitive channel protein MscL	-
PJW05_RS05105	-	1102804..1103049 (+)	246	WP_271410657.1	YdcH family protein	-
PJW05_RS05110	radA	1103140..1104504 (+)	1365	WP_271410658.1	DNA repair protein RadA	Machinery gene
PJW05_RS05115	-	1104618..1104986 (-)	369	WP_271410659.1	PilZ domain-containing protein	-
PJW05_RS05120	-	1105195..1105701 (+)	507	WP_271410660.1	DUF3015 domain-containing protein	-
PJW05_RS05125	glyA	1105897..1107150 (-)	1254	WP_271410661.1	serine hydroxymethyltransferase	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 48410.86 Da
• Isoelectric Point: 7.0798

>NTDB_id=776500 PJW05_RS05110 WP_271410658.1 1103140..1104504(+) (radA) [Pseudomonas sp. Q1-7]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVLEGAAATSGGRGGWAGQQAQIKTLAEVSVEEMPRFSTASTELD
RVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRFPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIIAT
ARVEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEG
ESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQESVPGSVVMATWEGSRPMLVEVQALVDTSHLAN
PRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALIAAIISSLRNRPLAHDVLVFGEVGLSGE
VRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLSVIAVTRLEQALDALFE

Nucleotide

• Length: 1365 bp

>NTDB_id=776500 PJW05_RS05110 WP_271410658.1 1103140..1104504(+) (radA) [Pseudomonas sp. Q1-7]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCCACCTTCCCCAAATGGGCCGGCCAGTGCGCCGACTG
CGGGGCGTGGAACACCTTGGTGGAAACCGTGCTGGAGGGCGCCGCCGCGACCTCCGGCGGGCGTGGGGGCTGGGCCGGCC
AGCAGGCGCAGATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAAATGCCGCGTTTCTCCACCGCTTCCACCGAGCTCGAT
CGCGTCCTCGGGGGCGGCCTGGTGGACGGCTCCGTGGTGCTGATCGGCGGCGATCCCGGTATCGGCAAGTCCACCATCCT
GCTGCAGACCCTGTGCAACATCGCCACGCGCTTCCCCGCACTCTACGTCACGGGTGAGGAGTCCCAGCAGCAGGTGGCCA
TGCGTGCCCGCCGCCTGGGCCTGCCGGAAGACAAGCTCAAGGTCATGACAGAGACCTGCATCGAGAGCATCATCGCCACC
GCGCGGGTCGAGCAGCCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGTTGCAGTCGGCCCCCGG
TGGCGTGGCCCAGGTCCGCGAGAGTGCGGCGCTGCTGGTGCGCTTTGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCG
GCCACGTGACCAAGGAAGGCGCCCTGGCGGGCCCCCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAAGGC
GAGTCCGACGGCCGCCTGCGTCTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGGCAT
GACCGACAAGGGCCTGAAGGAGGTTTCCAACCCGTCGGCGATCTTCCTCACCCGCGCCCAGGAGTCCGTGCCCGGCAGCG
TGGTAATGGCCACCTGGGAAGGCTCGCGACCGATGCTGGTGGAGGTGCAGGCGCTGGTGGACACCAGCCACCTGGCCAAT
CCGCGCCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGGCGGCATCCC
CACCTACGACCAGGATGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAAACCGCTTCCGACCTGGCGCTGATCG
CCGCGATCATTTCCAGCCTGCGAAACCGCCCGCTGGCCCATGACGTGCTGGTGTTCGGCGAGGTGGGCCTGTCCGGCGAA
GTGCGTCCGGTCCCCAGCGGCCAGGAGCGCCTCAAGGAGGCCGCCAAGCACGGTTTCAAGCGTGCCATCGTGCCCAAGGG
CAACGCGCCCAAGGAGTCACCGCCCGGCTTGAGCGTGATCGCCGTGACGCGTCTGGAGCAGGCGCTGGATGCGTTGTTCG
AGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (72-220)

• Subunit ChlI of Mg-chelatase (ChlI) (362-428)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.673	99.559	0.485
radA	Streptococcus pneumoniae Rx1	46.507	100	0.469
radA	Streptococcus pneumoniae R6	46.507	100	0.469
radA	Streptococcus pneumoniae TIGR4	46.507	100	0.469
radA	Streptococcus pneumoniae D39	46.507	100	0.469
radA	Streptococcus mitis SK321	46.696	100	0.467
radA	Streptococcus mitis NCTC 12261	46.476	100	0.465