Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PJH08_RS11445 Genome accession   NZ_CP116303
Coordinates   2609329..2610690 (-) Length   453 a.a.
NCBI ID   WP_271402794.1    Uniprot ID   -
Organism   Tenacibaculum finnmarkense strain 20-4106-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2604329..2615690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJH08_RS11415 (PJH08_11415) - 2605515..2606063 (+) 549 WP_193700972.1 hypothetical protein -
  PJH08_RS11420 (PJH08_11420) - 2606197..2606457 (+) 261 WP_271402793.1 hypothetical protein -
  PJH08_RS11425 (PJH08_11425) pnuC 2606441..2607091 (+) 651 WP_232123991.1 nicotinamide riboside transporter PnuC -
  PJH08_RS11430 (PJH08_11430) - 2607052..2607672 (+) 621 WP_193702124.1 AAA family ATPase -
  PJH08_RS11435 (PJH08_11435) arfB 2607650..2608054 (+) 405 WP_193700974.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  PJH08_RS11440 (PJH08_11440) - 2608222..2609127 (-) 906 WP_232124882.1 Abi family protein -
  PJH08_RS11445 (PJH08_11445) radA 2609329..2610690 (-) 1362 WP_271402794.1 DNA repair protein RadA Machinery gene
  PJH08_RS11450 (PJH08_11450) - 2610902..2611849 (-) 948 WP_271402795.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  PJH08_RS11455 (PJH08_11455) panD 2611861..2612211 (-) 351 WP_101914196.1 aspartate 1-decarboxylase -
  PJH08_RS11460 (PJH08_11460) panC 2612261..2613106 (-) 846 WP_271402796.1 pantoate--beta-alanine ligase -
  PJH08_RS11465 (PJH08_11465) - 2613203..2614021 (+) 819 WP_101914194.1 glycogen/starch synthase -
  PJH08_RS11470 (PJH08_11470) - 2614031..2615611 (+) 1581 WP_271402797.1 DUF4270 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49482.13 Da        Isoelectric Point: 7.9835

>NTDB_id=776491 PJH08_RS11445 WP_271402794.1 2609329..2610690(-) (radA) [Tenacibaculum finnmarkense strain 20-4106-2]
MAKIKTTFSCQSCGAQHSKWAGQCNTCKEWNTIVEEVIQKEEKRSWKTPENIRKTVSKPLKVQDIELNSEERIATKNTEL
DTVLGGGIVKGAVVLLGGEPGIGKSTLLLQIALNIPQKVLYVSGEESQSQIKMRAERLEASNSNCLILTETNTQKIFKNI
AEVVPDVLVIDSIQTLHTDTIEASPGSVSQIRETSAELIKFAKETGTPVLLIGHINKDGHIAGPKILEHMVDVVLQFEGD
RNHTYRILRSQKNRFGSTAELGIYEMLSTGLREVSNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGVP
QRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNVTGGIRVDDPAIDLAVVAAIISSNQDMAINPNVCFAAEVGLSGEI
RPVSRIDQRILEAEKLGYKTLVASKYNKISSKNHSIKLLLVGKIEEAFATLFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=776491 PJH08_RS11445 WP_271402794.1 2609329..2610690(-) (radA) [Tenacibaculum finnmarkense strain 20-4106-2]
ATGGCAAAAATAAAAACGACGTTTTCCTGTCAAAGCTGTGGCGCACAACATTCAAAATGGGCTGGGCAATGCAATACCTG
TAAAGAATGGAATACCATTGTTGAAGAAGTAATTCAAAAAGAAGAAAAAAGAAGCTGGAAAACCCCTGAAAATATACGAA
AAACAGTTTCGAAACCCTTAAAAGTACAAGATATTGAGTTAAATTCTGAGGAGCGTATTGCTACTAAAAACACCGAATTA
GACACCGTTTTAGGCGGAGGAATTGTAAAAGGAGCCGTTGTTTTATTAGGAGGAGAACCAGGAATTGGAAAATCAACATT
ATTGCTACAAATAGCGTTGAATATTCCTCAAAAAGTACTGTATGTTTCAGGAGAAGAAAGTCAATCGCAAATAAAAATGC
GTGCCGAACGCTTAGAAGCAAGCAATTCAAACTGTTTAATTTTAACAGAAACCAACACCCAAAAAATATTTAAAAATATT
GCCGAAGTAGTACCCGATGTATTGGTTATCGATTCTATTCAAACCCTACATACCGATACCATTGAAGCATCACCAGGAAG
TGTTTCTCAAATTCGAGAAACCTCCGCCGAGCTGATAAAATTTGCCAAAGAAACAGGAACACCAGTTTTATTAATCGGGC
ATATTAATAAAGACGGACATATCGCAGGACCCAAAATTTTAGAACACATGGTCGATGTTGTTTTACAATTTGAAGGCGAT
AGAAATCATACGTACAGAATTTTACGCTCTCAAAAAAACCGATTTGGTTCCACTGCCGAGTTAGGAATTTACGAAATGCT
ATCCACAGGATTGCGAGAAGTTTCTAATCCGTCAGAAATATTAATATCTAAAAAAGATGCCGATTTAAGCGGAACCGCAA
TTGCTTCAACCCTAGAGGGAATCCGCCCGTTAATGATTGAAATTCAAGCTTTGGTAAGCACCGCAGTTTATGGAGTTCCA
CAGCGTTCTACCACAGGATATAATTTAAAAAGATTACACATGATTTTGGCTGTTTTAGAAAAACGAGCAGGTTTTAAATT
AGGCGCAAAAGATGTGTTTTTAAATGTTACCGGAGGAATCCGTGTAGATGACCCCGCAATTGATTTAGCCGTTGTTGCCG
CAATTATTTCTTCCAATCAAGACATGGCAATAAACCCGAATGTGTGTTTTGCTGCCGAAGTTGGTTTATCAGGAGAAATA
AGACCTGTTTCAAGAATCGACCAACGTATTTTAGAAGCCGAAAAATTAGGATATAAAACTTTAGTAGCATCAAAATATAA
CAAAATATCTTCAAAAAATCACTCGATAAAATTGCTTTTAGTCGGTAAAATTGAAGAAGCTTTTGCTACGTTGTTTGCGT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-219)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.899

100

0.49
  radA Streptococcus mitis NCTC 12261

46.827

100

0.472
  radA Streptococcus pneumoniae Rx1

46.827

100

0.472
  radA Streptococcus pneumoniae TIGR4

46.827

100

0.472
  radA Streptococcus pneumoniae D39

46.827

100

0.472
  radA Streptococcus pneumoniae R6

46.827

100

0.472
  radA Streptococcus mitis SK321

46.608

100

0.47