Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QVM93_RS08630 Genome accession   NZ_CP128958
Coordinates   1808673..1809278 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain TUM2330     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1803673..1814278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM93_RS08610 (QVM93_08610) aes 1803814..1804773 (+) 960 WP_000764314.1 acetyl esterase -
  QVM93_RS08615 (QVM93_08615) hemH 1804770..1805732 (-) 963 WP_001250117.1 ferrochelatase -
  QVM93_RS08620 (QVM93_08620) adk 1805864..1806508 (-) 645 WP_001220233.1 adenylate kinase -
  QVM93_RS08625 (QVM93_08625) htpG 1806689..1808563 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QVM93_RS08630 (QVM93_08630) recR 1808673..1809278 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QVM93_RS08635 (QVM93_08635) ybaB 1809278..1809607 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QVM93_RS08640 (QVM93_08640) dnaX 1809660..1811591 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QVM93_RS08645 (QVM93_08645) apt 1811720..1812271 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QVM93_RS08650 (QVM93_08650) ybaN 1812424..1812801 (-) 378 WP_001188905.1 DUF454 family protein -
  QVM93_RS08655 (QVM93_08655) priC 1812871..1813398 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  QVM93_RS08660 (QVM93_08660) rsmS 1813412..1813576 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=776488 QVM93_RS08630 WP_001195025.1 1808673..1809278(-) (recR) [Escherichia coli strain TUM2330]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=776488 QVM93_RS08630 WP_001195025.1 1808673..1809278(-) (recR) [Escherichia coli strain TUM2330]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443