Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KK030_RS15470 Genome accession   NZ_CP116249
Coordinates   3095489..3096115 (-) Length   208 a.a.
NCBI ID   WP_008499926.1    Uniprot ID   A0AAX1WHW5
Organism   Enterobacter roggenkampii strain 120063     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090489..3101115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK030_RS15455 (KK030_15425) helD 3090726..3092780 (-) 2055 WP_214573563.1 DNA helicase IV -
  KK030_RS15460 (KK030_15430) - 3092904..3093350 (+) 447 WP_023343701.1 YccF domain-containing protein -
  KK030_RS15465 (KK030_15435) yccS 3093370..3095532 (+) 2163 WP_214573562.1 YccS family putative transporter -
  KK030_RS15470 (KK030_15440) sxy/tfoX 3095489..3096115 (-) 627 WP_008499926.1 TfoX/Sxy family DNA transformation protein Regulator
  KK030_RS15475 (KK030_15445) sulA 3096333..3096842 (+) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  KK030_RS15480 (KK030_15450) ompA 3097197..3098252 (+) 1056 WP_008499928.1 porin OmpA -
  KK030_RS15485 (KK030_15455) matP 3098318..3098770 (-) 453 WP_008499929.1 macrodomain Ter protein MatP -
  KK030_RS15490 (KK030_15460) - 3098957..3100717 (+) 1761 WP_214573561.1 AAA family ATPase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23885.49 Da        Isoelectric Point: 9.6439

>NTDB_id=776383 KK030_RS15470 WP_008499926.1 3095489..3096115(-) (sxy/tfoX) [Enterobacter roggenkampii strain 120063]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=776383 KK030_RS15470 WP_008499926.1 3095489..3096115(-) (sxy/tfoX) [Enterobacter roggenkampii strain 120063]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCAGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGTTGGAAGGGGCAATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567