Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PH192_RS06385 Genome accession   NZ_CP116241
Coordinates   1278422..1279051 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 7.1994/NIST0056     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273422..1284051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH192_RS06370 (PH192_06370) helD 1273664..1275718 (-) 2055 WP_001315388.1 DNA helicase IV -
  PH192_RS06375 (PH192_06375) yccF 1275841..1276287 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PH192_RS06380 (PH192_06380) yccS 1276297..1278459 (+) 2163 WP_000875044.1 YccS family putative transporter -
  PH192_RS06385 (PH192_06385) sxy/tfoX 1278422..1279051 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PH192_RS06390 (PH192_06390) sulA 1279270..1279779 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PH192_RS06395 (PH192_06395) ompA 1280136..1281188 (+) 1053 WP_001361736.1 porin OmpA -
  PH192_RS06400 (PH192_06400) matP 1281264..1281716 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PH192_RS06405 (PH192_06405) ycbZ 1281902..1283662 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=776345 PH192_RS06385 WP_000839153.1 1278422..1279051(-) (sxy/tfoX) [Escherichia coli strain 7.1994/NIST0056]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=776345 PH192_RS06385 WP_000839153.1 1278422..1279051(-) (sxy/tfoX) [Escherichia coli strain 7.1994/NIST0056]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1