Detailed information NTG0776330

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVM95_RS05525
• Genome accession: NZ_CP128947
• Coordinates: 1147185..1148177 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM2826
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1142185..1153177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVM95_RS05495 (QVM95_05495)	ispD	1142246..1142956 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVM95_RS05500 (QVM95_05500)	ispF	1142956..1143435 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVM95_RS05505 (QVM95_05505)	truD	1143432..1144481 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QVM95_RS05510 (QVM95_05510)	surE	1144462..1145223 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVM95_RS05515 (QVM95_05515)	pcm	1145217..1145843 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVM95_RS05520 (QVM95_05520)	nlpD	1146028..1147122 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QVM95_RS05525 (QVM95_05525)	rpoS	1147185..1148177 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVM95_RS05530 (QVM95_05530)	-	1148348..1148899 (-)	552	WP_001179444.1	flavodoxin family protein	-
QVM95_RS05535 (QVM95_05535)	-	1149124..1150167 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QVM95_RS05540 (QVM95_05540)	ygbN	1150310..1151674 (-)	1365	WP_000104433.1	GntP family transporter	-
QVM95_RS05545 (QVM95_05545)	ygbM	1151763..1152539 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=776330 QVM95_RS05525 WP_000081550.1 1147185..1148177(+) (rpoS) [Escherichia coli strain TUM2826]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=776330 QVM95_RS05525 WP_000081550.1 1147185..1148177(+) (rpoS) [Escherichia coli strain TUM2826]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715