Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QVM96_RS17140 Genome accession   NZ_CP128939
Coordinates   3435769..3436374 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain TUM9754     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3430769..3441374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM96_RS17120 (QVM96_17120) aes 3430806..3431765 (+) 960 WP_000801850.1 acetyl esterase -
  QVM96_RS17125 (QVM96_17125) hemH 3431762..3432724 (-) 963 WP_001250088.1 ferrochelatase -
  QVM96_RS17130 (QVM96_17130) adk 3432960..3433604 (-) 645 WP_001220233.1 adenylate kinase -
  QVM96_RS17135 (QVM96_17135) htpG 3433785..3435659 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QVM96_RS17140 (QVM96_17140) recR 3435769..3436374 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QVM96_RS17145 (QVM96_17145) ybaB 3436374..3436703 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QVM96_RS17150 (QVM96_17150) dnaX 3436756..3438687 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QVM96_RS17155 (QVM96_17155) apt 3438816..3439367 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QVM96_RS17160 (QVM96_17160) ybaN 3439520..3439897 (-) 378 WP_001188905.1 DUF454 family protein -
  QVM96_RS17165 (QVM96_17165) priC 3439967..3440494 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  QVM96_RS17170 (QVM96_17170) rsmS 3440508..3440669 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=776280 QVM96_RS17140 WP_001195025.1 3435769..3436374(-) (recR) [Escherichia coli strain TUM9754]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=776280 QVM96_RS17140 WP_001195025.1 3435769..3436374(-) (recR) [Escherichia coli strain TUM9754]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443