Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   PHA49_RS06870 Genome accession   NZ_CP116234
Coordinates   1436389..1437702 (-) Length   437 a.a.
NCBI ID   WP_271330663.1    Uniprot ID   -
Organism   Helicobacter pylori strain H390d     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431389..1442702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA49_RS06840 (PHA49_06840) nadC 1431852..1432673 (-) 822 WP_050852142.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PHA49_RS06845 (PHA49_06845) nadA 1432673..1433683 (-) 1011 WP_180582419.1 quinolinate synthase NadA -
  PHA49_RS06850 (PHA49_06850) - 1433670..1434476 (-) 807 WP_271330660.1 phosphatidylserine decarboxylase -
  PHA49_RS06855 (PHA49_06855) - 1434473..1434976 (-) 504 WP_000953083.1 DUF6115 domain-containing protein -
  PHA49_RS06860 (PHA49_06860) - 1434989..1435483 (-) 495 WP_271330661.1 hypothetical protein -
  PHA49_RS06865 (PHA49_06865) mqnP 1435476..1436318 (-) 843 WP_271330662.1 menaquinone biosynthesis prenyltransferase MqnP -
  PHA49_RS06870 (PHA49_06870) comEC/comE3 1436389..1437702 (-) 1314 WP_271330663.1 ComEC/Rec2 family competence protein Machinery gene
  PHA49_RS06875 (PHA49_06875) - 1437699..1439159 (-) 1461 WP_271330664.1 replicative DNA helicase -
  PHA49_RS06880 (PHA49_06880) - 1439170..1440564 (-) 1395 WP_271330665.1 NAD(P)H-hydrate dehydratase -
  PHA49_RS06885 (PHA49_06885) crdS 1440567..1441769 (-) 1203 WP_271331168.1 copper-sensing histidine kinase CrdS -
  PHA49_RS06890 (PHA49_06890) crdR 1441735..1442376 (-) 642 WP_271330666.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50011.99 Da        Isoelectric Point: 9.8860

>NTDB_id=776266 PHA49_RS06870 WP_271330663.1 1436389..1437702(-) (comEC/comE3) [Helicobacter pylori strain H390d]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRRFIDSVHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=776266 PHA49_RS06870 WP_271330663.1 1436389..1437702(-) (comEC/comE3) [Helicobacter pylori strain H390d]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCGTTTCATTGACAGCGTTCATTCAAGCGCCTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCACTAGTGTTTTTGAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCACATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941