Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QVM97_RS21790 Genome accession   NZ_CP128931
Coordinates   4329302..4329979 (+) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain TUM9757     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4324302..4334979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM97_RS21755 (QVM97_21755) gspG 4324782..4325219 (+) 438 WP_001202880.1 type II secretion system major pseudopilin GspG -
  QVM97_RS21760 (QVM97_21760) gspH 4325227..4325736 (+) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  QVM97_RS21765 (QVM97_21765) gspI 4325733..4326110 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  QVM97_RS21770 (QVM97_21770) gspJ 4326103..4326690 (+) 588 WP_057108302.1 type II secretion system minor pseudopilin GspJ -
  QVM97_RS21775 (QVM97_21775) gspK 4326683..4327666 (+) 984 WP_089601141.1 type II secretion system minor pseudopilin GspK -
  QVM97_RS21780 (QVM97_21780) gspL 4327681..4328844 (+) 1164 WP_001115235.1 type II secretion system protein GspL -
  QVM97_RS21785 (QVM97_21785) gspM 4328841..4329302 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  QVM97_RS21790 (QVM97_21790) pilD 4329302..4329979 (+) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  QVM97_RS21795 (QVM97_21795) bfr 4330008..4330484 (-) 477 WP_000675504.1 bacterioferritin -
  QVM97_RS21800 (QVM97_21800) bfd 4330556..4330750 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  QVM97_RS21805 (QVM97_21805) - 4330919..4331515 (-) 597 Protein_4268 hypothetical protein -
  QVM97_RS21810 (QVM97_21810) istA 4331615..4332787 (+) 1173 WP_000952373.1 IS21-like element IS21 family transposase -
  QVM97_RS21815 (QVM97_21815) istB 4332787..4333583 (+) 797 Protein_4270 IS21-like element IS21 family helper ATPase IstB -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=776209 QVM97_RS21790 WP_000178161.1 4329302..4329979(+) (pilD) [Escherichia coli strain TUM9757]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=776209 QVM97_RS21790 WP_000178161.1 4329302..4329979(+) (pilD) [Escherichia coli strain TUM9757]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACTTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378