Detailed information NTG0776199

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVM97_RS18555
• Genome accession: NZ_CP128931
• Coordinates: 3704325..3705317 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM9757
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3699325..3710317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVM97_RS18535 (QVM97_18535)	-	3699753..3699887 (-)	135	WP_000611926.1	hypothetical protein	-
QVM97_RS18540 (QVM97_18540)	mutS	3699963..3702524 (+)	2562	WP_001272924.1	DNA mismatch repair protein MutS	-
QVM97_RS18550 (QVM97_18550)	-	3703329..3704237 (+)	909	Protein_3633	GntP family transporter	-
QVM97_RS18555 (QVM97_18555)	rpoS	3704325..3705317 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVM97_RS18560 (QVM97_18560)	nlpD	3705380..3706474 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QVM97_RS18565 (QVM97_18565)	pcm	3706659..3707285 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVM97_RS18570 (QVM97_18570)	surE	3707279..3708040 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVM97_RS18575 (QVM97_18575)	truD	3708021..3709070 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QVM97_RS18580 (QVM97_18580)	ispF	3709067..3709546 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVM97_RS18585 (QVM97_18585)	ispD	3709546..3710256 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=776199 QVM97_RS18555 WP_000081550.1 3704325..3705317(-) (rpoS) [Escherichia coli strain TUM9757]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=776199 QVM97_RS18555 WP_000081550.1 3704325..3705317(-) (rpoS) [Escherichia coli strain TUM9757]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715