Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QVM97_RS07965 Genome accession   NZ_CP128931
Coordinates   1640176..1640805 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TUM9757     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635176..1645805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVM97_RS07945 (QVM97_07945) ycbZ 1635566..1637326 (-) 1761 WP_000156516.1 Lon protease family protein -
  QVM97_RS07950 (QVM97_07950) matP 1637512..1637964 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QVM97_RS07955 (QVM97_07955) ompA 1638039..1639091 (-) 1053 WP_001307702.1 porin OmpA -
  QVM97_RS07960 (QVM97_07960) sulA 1639448..1639957 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QVM97_RS07965 (QVM97_07965) sxy/tfoX 1640176..1640805 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QVM97_RS07970 (QVM97_07970) yccS 1640768..1642930 (-) 2163 WP_225379828.1 YccS family putative transporter -
  QVM97_RS07975 (QVM97_07975) yccF 1642940..1643386 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QVM97_RS07980 (QVM97_07980) helD 1643509..1645563 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=776173 QVM97_RS07965 WP_000839153.1 1640176..1640805(+) (sxy/tfoX) [Escherichia coli strain TUM9757]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=776173 QVM97_RS07965 WP_000839153.1 1640176..1640805(+) (sxy/tfoX) [Escherichia coli strain TUM9757]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1