Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PGS39_RS26515 Genome accession   NZ_CP116204
Coordinates   5029669..5031018 (-) Length   449 a.a.
NCBI ID   WP_000900493.1    Uniprot ID   -
Organism   Bacillus paranthracis strain NVH_0075/95     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5024669..5036018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGS39_RS26495 (PGS39_26495) secA 5024995..5027502 (-) 2508 WP_000579382.1 preprotein translocase subunit SecA -
  PGS39_RS26500 (PGS39_26500) hpf 5027778..5028320 (-) 543 WP_000671191.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PGS39_RS26505 (PGS39_26505) cspC 5028641..5028838 (-) 198 WP_001162041.1 cold shock protein CspC -
  PGS39_RS26510 (PGS39_26510) - 5028965..5029669 (-) 705 WP_002028884.1 ComF family protein -
  PGS39_RS26515 (PGS39_26515) comFA 5029669..5031018 (-) 1350 WP_000900493.1 ATP-dependent helicase ComFA Machinery gene
  PGS39_RS26520 (PGS39_26520) - 5031145..5032602 (-) 1458 WP_000499503.1 NlpC/P60 family protein -
  PGS39_RS26525 (PGS39_26525) - 5032750..5033064 (-) 315 WP_000400857.1 winged helix-turn-helix transcriptional regulator -
  PGS39_RS26530 (PGS39_26530) - 5033238..5034080 (-) 843 WP_000844764.1 DegV family protein -
  PGS39_RS26535 (PGS39_26535) - 5034320..5034955 (+) 636 WP_000926695.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51011.49 Da        Isoelectric Point: 9.7406

>NTDB_id=776167 PGS39_RS26515 WP_000900493.1 5029669..5031018(-) (comFA) [Bacillus paranthracis strain NVH_0075/95]
MLGGKQLLLEELSSDLRRELSDLKKRGEVVCVQGITKNTSKYICQRCGNIEQRLFASFLCKRCGKACAYCRKCITMGRVS
ECAVLVRGIHERNGDRELNPLQWNGALSIGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVRQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEEISQLLKGLDNRIDGVHAEDSMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=776167 PGS39_RS26515 WP_000900493.1 5029669..5031018(-) (comFA) [Bacillus paranthracis strain NVH_0075/95]
ATGCTTGGTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAGGGG
AGAGGTTGTATGTGTACAAGGTATAACGAAGAATACTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGCGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGCGGAATTCATGAAAGAAACGGAGACAGGGAGCTAAATCCATTACAGTGGAATGGGGCTTT
ATCGATTGGTCAGGAGTTGGCGGCGCAAGGAGTTATAGAAGCGATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTCCAAAAAGGAGAAAGAGTGTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTTAGGCAAGCAATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAATGGAAGCGTAATTTCAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCAGTTGTTGAAAGGGTTGGATAATAGAATCGATGGCGTGCATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGGCGTAGTTTTGAAGAGCCATATGGTGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
AATGGTACGCGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(311-408)

Type III restriction enzyme, res subunit (ResIII)

(110-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.632

93.096

0.49
  comFA Latilactobacillus sakei subsp. sakei 23K

40

90.2

0.361