Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PGS39_RS22095 Genome accession   NZ_CP116204
Coordinates   4211648..4212394 (-) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus paranthracis strain NVH_0075/95     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4206648..4217394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGS39_RS22080 (PGS39_22080) dnaG 4207418..4209214 (-) 1797 WP_000528216.1 DNA primase -
  PGS39_RS22085 (PGS39_22085) - 4210066..4210878 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  PGS39_RS22090 (PGS39_22090) - 4210908..4211540 (-) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  PGS39_RS22095 (PGS39_22095) recO 4211648..4212394 (-) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  PGS39_RS22100 (PGS39_22100) - 4212428..4212571 (-) 144 WP_000883924.1 YqzL family protein -
  PGS39_RS22105 (PGS39_22105) era 4212748..4213653 (-) 906 WP_001080241.1 GTPase Era -
  PGS39_RS22110 (PGS39_22110) - 4213646..4214044 (-) 399 WP_001014347.1 cytidine deaminase -
  PGS39_RS22115 (PGS39_22115) - 4214144..4214497 (-) 354 WP_000715482.1 diacylglycerol kinase family protein -
  PGS39_RS22120 (PGS39_22120) ybeY 4214494..4214964 (-) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  PGS39_RS22125 (PGS39_22125) - 4214961..4217105 (-) 2145 WP_000946450.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=776157 PGS39_RS22095 WP_000487010.1 4211648..4212394(-) (recO) [Bacillus paranthracis strain NVH_0075/95]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=776157 PGS39_RS22095 WP_000487010.1 4211648..4212394(-) (recO) [Bacillus paranthracis strain NVH_0075/95]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552