Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PGS39_RS21155 Genome accession   NZ_CP116204
Coordinates   4065723..4067462 (-) Length   579 a.a.
NCBI ID   WP_000947749.1    Uniprot ID   A0A1J9YIX3
Organism   Bacillus paranthracis strain NVH_0075/95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4060723..4072462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGS39_RS21130 (PGS39_21130) - 4061762..4061995 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  PGS39_RS21135 (PGS39_21135) - 4062045..4062773 (-) 729 WP_000172554.1 glycerophosphodiester phosphodiesterase -
  PGS39_RS21140 (PGS39_21140) - 4062824..4062970 (+) 147 WP_000803575.1 YycC family protein -
  PGS39_RS21145 (PGS39_21145) spo0A 4063224..4064018 (-) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  PGS39_RS21150 (PGS39_21150) spoIVB 4064306..4065604 (-) 1299 WP_002028467.1 SpoIVB peptidase -
  PGS39_RS21155 (PGS39_21155) recN 4065723..4067462 (-) 1740 WP_000947749.1 DNA repair protein RecN Machinery gene
  PGS39_RS21160 (PGS39_21160) argR 4067729..4068178 (-) 450 WP_001032581.1 arginine repressor ArgR -
  PGS39_RS21165 (PGS39_21165) - 4068321..4069160 (-) 840 WP_001274747.1 TlyA family RNA methyltransferase -
  PGS39_RS21170 (PGS39_21170) dxs 4069164..4071056 (-) 1893 WP_000366459.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PGS39_RS21175 (PGS39_21175) ispA 4071359..4072249 (-) 891 WP_000150362.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65775.82 Da        Isoelectric Point: 4.8260

>NTDB_id=776155 PGS39_RS21155 WP_000947749.1 4065723..4067462(-) (recN) [Bacillus paranthracis strain NVH_0075/95]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKIDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=776155 PGS39_RS21155 WP_000947749.1 4065723..4067462(-) (recN) [Bacillus paranthracis strain NVH_0075/95]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTGTTTTATGTGGAAGATGATAAGCATCCATGTATTGAAAAA
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGACAACACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTA
GATATATACCAAAACGTATATGCTGACTATGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGTTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAAGCGGATTTAAAGATAGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTATAAAGCATTAGGGGATGCGTATCGCTCGTTAAGTGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCCAATAGTTATTATTTATTAGAAGAAGTTGCCTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGCTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCAGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGACTTACAGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACAAATCCGGGTGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCCCGTATCA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAGATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCAAATGATCGAACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCACATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9YIX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601