Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PIB97_RS14200 Genome accession   NZ_CP116197
Coordinates   2952298..2952927 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DETEC-C31     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2947298..2957927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB97_RS14185 (PIB97_14185) helD 2947540..2949594 (-) 2055 WP_000420536.1 DNA helicase IV -
  PIB97_RS14190 (PIB97_14190) yccF 2949717..2950163 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PIB97_RS14195 (PIB97_14195) yccS 2950173..2952335 (+) 2163 WP_000323868.1 YccS family putative transporter -
  PIB97_RS14200 (PIB97_14200) sxy/tfoX 2952298..2952927 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PIB97_RS14205 (PIB97_14205) sulA 2953146..2953655 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  PIB97_RS14210 (PIB97_14210) ompA 2954012..2955067 (+) 1056 WP_000750414.1 porin OmpA -
  PIB97_RS14215 (PIB97_14215) matP 2955145..2955597 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  PIB97_RS14220 (PIB97_14220) ycbZ 2955783..2957543 (+) 1761 WP_021556661.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=776116 PIB97_RS14200 WP_000839153.1 2952298..2952927(-) (sxy/tfoX) [Escherichia coli strain DETEC-C31]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=776116 PIB97_RS14200 WP_000839153.1 2952298..2952927(-) (sxy/tfoX) [Escherichia coli strain DETEC-C31]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1