Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H7R48_RS15580 Genome accession   NZ_AP022298
Coordinates   3213764..3214393 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain BEC1-S17-ESBL-09     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3208764..3219393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R48_RS15565 (BE1S17E09_30340) helD 3209006..3211060 (-) 2055 WP_001305911.1 DNA helicase IV -
  H7R48_RS15570 (BE1S17E09_30350) yccF 3211183..3211629 (+) 447 WP_112083372.1 YccF domain-containing protein -
  H7R48_RS15575 (BE1S17E09_30360) yccS 3211639..3213801 (+) 2163 WP_000875037.1 YccS family putative transporter -
  H7R48_RS15580 (BE1S17E09_30370) sxy/tfoX 3213764..3214393 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H7R48_RS15585 (BE1S17E09_30380) sulA 3214612..3215121 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H7R48_RS15590 (BE1S17E09_30390) ompA 3215478..3216530 (+) 1053 WP_001305912.1 porin OmpA -
  H7R48_RS15595 (BE1S17E09_30400) matP 3216607..3217059 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H7R48_RS15600 (BE1S17E09_30410) ycbZ 3217245..3219005 (+) 1761 WP_001586869.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=77611 H7R48_RS15580 WP_000839153.1 3213764..3214393(-) (sxy/tfoX) [Escherichia coli strain BEC1-S17-ESBL-09]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=77611 H7R48_RS15580 WP_000839153.1 3213764..3214393(-) (sxy/tfoX) [Escherichia coli strain BEC1-S17-ESBL-09]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment