Detailed information NTG0776089

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVM98_RS05285
• Genome accession: NZ_CP128926
• Coordinates: 1092771..1093763 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM9812
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1087771..1098763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVM98_RS05255 (QVM98_05255)	ispD	1087832..1088542 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVM98_RS05260 (QVM98_05260)	ispF	1088542..1089021 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVM98_RS05265 (QVM98_05265)	truD	1089018..1090067 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QVM98_RS05270 (QVM98_05270)	surE	1090048..1090809 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVM98_RS05275 (QVM98_05275)	pcm	1090803..1091429 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVM98_RS05280 (QVM98_05280)	nlpD	1091614..1092708 (+)	1095	WP_310592938.1	murein hydrolase activator NlpD	-
QVM98_RS05285 (QVM98_05285)	rpoS	1092771..1093763 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVM98_RS05290 (QVM98_05290)	ygbN	1093857..1095221 (-)	1365	WP_000104441.1	GntP family transporter	-
QVM98_RS05295 (QVM98_05295)	ygbM	1095310..1096086 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QVM98_RS05300 (QVM98_05300)	ygbL	1096091..1096729 (-)	639	WP_001278994.1	aldolase	-
QVM98_RS05305 (QVM98_05305)	otnK	1096726..1097988 (-)	1263	WP_063078571.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=776089 QVM98_RS05285 WP_000081550.1 1092771..1093763(+) (rpoS) [Escherichia coli strain TUM9812]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=776089 QVM98_RS05285 WP_000081550.1 1092771..1093763(+) (rpoS) [Escherichia coli strain TUM9812]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715