Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PIB63_RS08070 Genome accession   NZ_CP116194
Coordinates   1692816..1693445 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain DETEC-E1005     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687816..1698445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB63_RS08050 (PIB63_08050) ycbZ 1688216..1689976 (-) 1761 WP_000156498.1 AAA family ATPase -
  PIB63_RS08055 (PIB63_08055) matP 1690162..1690614 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  PIB63_RS08060 (PIB63_08060) ompA 1690692..1691732 (-) 1041 WP_001313715.1 porin OmpA -
  PIB63_RS08065 (PIB63_08065) sulA 1692088..1692597 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  PIB63_RS08070 (PIB63_08070) sxy/tfoX 1692816..1693445 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PIB63_RS08075 (PIB63_08075) yccS 1693408..1695570 (-) 2163 WP_000875041.1 YccS family putative transporter -
  PIB63_RS08080 (PIB63_08080) yccF 1695580..1696026 (-) 447 WP_001261236.1 YccF domain-containing protein -
  PIB63_RS08085 (PIB63_08085) helD 1696149..1698203 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=776084 PIB63_RS08070 WP_000839136.1 1692816..1693445(+) (sxy/tfoX) [Escherichia coli strain DETEC-E1005]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=776084 PIB63_RS08070 WP_000839136.1 1692816..1693445(+) (sxy/tfoX) [Escherichia coli strain DETEC-E1005]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99