Detailed information NTG0776009

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVM99_RS05145
• Genome accession: NZ_CP128923
• Coordinates: 1058883..1059875 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM9868
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1053883..1064875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVM99_RS05115 (QVM99_05115)	ispD	1053944..1054654 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVM99_RS05120 (QVM99_05120)	ispF	1054654..1055133 (+)	480	WP_264832554.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVM99_RS05125 (QVM99_05125)	truD	1055130..1056179 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QVM99_RS05130 (QVM99_05130)	surE	1056160..1056921 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVM99_RS05135 (QVM99_05135)	pcm	1056915..1057541 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVM99_RS05140 (QVM99_05140)	nlpD	1057726..1058820 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QVM99_RS05145 (QVM99_05145)	rpoS	1058883..1059875 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVM99_RS05150 (QVM99_05150)	ygbN	1059969..1061333 (-)	1365	WP_000104441.1	GntP family transporter	-
QVM99_RS05155 (QVM99_05155)	ygbM	1061422..1062198 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QVM99_RS05160 (QVM99_05160)	ygbL	1062203..1062841 (-)	639	WP_001278994.1	aldolase	-
QVM99_RS05165 (QVM99_05165)	otnK	1062838..1064100 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=776009 QVM99_RS05145 WP_000081550.1 1058883..1059875(+) (rpoS) [Escherichia coli strain TUM9868]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=776009 QVM99_RS05145 WP_000081550.1 1058883..1059875(+) (rpoS) [Escherichia coli strain TUM9868]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715