Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PIC02_RS08330 Genome accession   NZ_CP116176
Coordinates   1756628..1757257 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DETEC-E601     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751628..1762257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC02_RS08310 (PIC02_08305) ycbZ 1752029..1753789 (-) 1761 WP_000156526.1 AAA family ATPase -
  PIC02_RS08315 (PIC02_08310) matP 1753975..1754427 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PIC02_RS08320 (PIC02_08315) ompA 1754503..1755543 (-) 1041 WP_000750416.1 porin OmpA -
  PIC02_RS08325 (PIC02_08320) sulA 1755900..1756409 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PIC02_RS08330 (PIC02_08325) sxy/tfoX 1756628..1757257 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PIC02_RS08335 (PIC02_08330) yccS 1757220..1759382 (-) 2163 WP_000875044.1 YccS family putative transporter -
  PIC02_RS08340 (PIC02_08335) yccF 1759392..1759838 (-) 447 WP_001261231.1 YccF domain-containing protein -
  PIC02_RS08345 (PIC02_08340) helD 1759961..1762015 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=775993 PIC02_RS08330 WP_000839153.1 1756628..1757257(+) (sxy/tfoX) [Escherichia coli strain DETEC-E601]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=775993 PIC02_RS08330 WP_000839153.1 1756628..1757257(+) (sxy/tfoX) [Escherichia coli strain DETEC-E601]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1