Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PID12_RS14355 Genome accession   NZ_CP116166
Coordinates   2917579..2918208 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DETEC-P169     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912579..2923208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PID12_RS14340 (PID12_14340) helD 2912821..2914875 (-) 2055 WP_000420536.1 DNA helicase IV -
  PID12_RS14345 (PID12_14345) yccF 2914998..2915444 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PID12_RS14350 (PID12_14350) yccS 2915454..2917616 (+) 2163 WP_000875023.1 YccS family putative transporter -
  PID12_RS14355 (PID12_14355) sxy/tfoX 2917579..2918208 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PID12_RS14360 (PID12_14360) sulA 2918427..2918936 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PID12_RS14365 (PID12_14365) ompA 2919293..2920345 (+) 1053 WP_001361736.1 porin OmpA -
  PID12_RS14370 (PID12_14370) matP 2920421..2920873 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PID12_RS14375 (PID12_14375) ycbZ 2921059..2922819 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=775958 PID12_RS14355 WP_000839153.1 2917579..2918208(-) (sxy/tfoX) [Escherichia coli strain DETEC-P169]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=775958 PID12_RS14355 WP_000839153.1 2917579..2918208(-) (sxy/tfoX) [Escherichia coli strain DETEC-P169]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1