Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QVN00_RS17245 Genome accession   NZ_CP128919
Coordinates   3591783..3592388 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain TUM13066     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3586783..3597388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN00_RS17225 (QVN00_17225) aes 3586937..3587905 (+) 969 WP_000801820.1 acetyl esterase -
  QVN00_RS17230 (QVN00_17230) hemH 3587880..3588842 (-) 963 WP_001250114.1 ferrochelatase -
  QVN00_RS17235 (QVN00_17235) adk 3588974..3589618 (-) 645 WP_001220233.1 adenylate kinase -
  QVN00_RS17240 (QVN00_17240) htpG 3589799..3591673 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QVN00_RS17245 (QVN00_17245) recR 3591783..3592388 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QVN00_RS17250 (QVN00_17250) ybaB 3592388..3592717 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QVN00_RS17255 (QVN00_17255) dnaX 3592770..3594701 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  QVN00_RS17260 (QVN00_17260) apt 3594830..3595381 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QVN00_RS17265 (QVN00_17265) ybaN 3595534..3595911 (-) 378 WP_001188900.1 DUF454 family protein -
  QVN00_RS17270 (QVN00_17270) priC 3595981..3596508 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  QVN00_RS17275 (QVN00_17275) rsmS 3596522..3596683 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QVN00_RS17280 (QVN00_17280) - 3596736..3596834 (-) 99 Protein_3398 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=775955 QVN00_RS17245 WP_001195025.1 3591783..3592388(-) (recR) [Escherichia coli strain TUM13066]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=775955 QVN00_RS17245 WP_001195025.1 3591783..3592388(-) (recR) [Escherichia coli strain TUM13066]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443