Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H7R29_RS13735 Genome accession   NZ_AP022295
Coordinates   2850400..2851029 (-) Length   209 a.a.
NCBI ID   WP_182924096.1    Uniprot ID   -
Organism   Escherichia coli strain BEC1-S17-ESBL-07     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2845400..2856029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R29_RS13720 (BE1S17E07_26650) helD 2845642..2847696 (-) 2055 WP_001349949.1 DNA helicase IV -
  H7R29_RS13725 (BE1S17E07_26660) yccF 2847819..2848265 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H7R29_RS13730 (BE1S17E07_26670) yccS 2848275..2850437 (+) 2163 WP_000875023.1 YccS family putative transporter -
  H7R29_RS13735 (BE1S17E07_26680) sxy/tfoX 2850400..2851029 (-) 630 WP_182924096.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H7R29_RS13740 (BE1S17E07_26690) sulA 2851248..2851757 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H7R29_RS13745 (BE1S17E07_26700) ompA 2852114..2853154 (+) 1041 WP_000750416.1 porin OmpA -
  H7R29_RS13750 (BE1S17E07_26710) matP 2853229..2853681 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H7R29_RS13755 (BE1S17E07_26720) ycbZ 2853867..2855627 (+) 1761 WP_182924097.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.99 Da        Isoelectric Point: 8.8133

>NTDB_id=77589 H7R29_RS13735 WP_182924096.1 2850400..2851029(-) (sxy/tfoX) [Escherichia coli strain BEC1-S17-ESBL-07]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKNTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=77589 H7R29_RS13735 WP_182924096.1 2850400..2851029(-) (sxy/tfoX) [Escherichia coli strain BEC1-S17-ESBL-07]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAACACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment