Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PIB57_RS15080 Genome accession   NZ_CP116123
Coordinates   3120693..3121322 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DETEC-P666     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3115693..3126322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB57_RS15065 (PIB57_15070) helD 3115935..3117989 (-) 2055 WP_021561301.1 DNA helicase IV -
  PIB57_RS15070 (PIB57_15075) yccF 3118112..3118558 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PIB57_RS15075 (PIB57_15080) yccS 3118568..3120730 (+) 2163 WP_001550920.1 YccS family putative transporter -
  PIB57_RS15080 (PIB57_15085) sxy/tfoX 3120693..3121322 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PIB57_RS15085 (PIB57_15090) sulA 3121541..3122050 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  PIB57_RS15090 (PIB57_15095) ompA 3122407..3123459 (+) 1053 WP_000750418.1 porin OmpA -
  PIB57_RS15095 (PIB57_15100) matP 3123534..3123986 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PIB57_RS15100 (PIB57_15105) ycbZ 3124172..3125932 (+) 1761 WP_000156479.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=775847 PIB57_RS15080 WP_000839153.1 3120693..3121322(-) (sxy/tfoX) [Escherichia coli strain DETEC-P666]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=775847 PIB57_RS15080 WP_000839153.1 3120693..3121322(-) (sxy/tfoX) [Escherichia coli strain DETEC-P666]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1