Detailed information NTG0775835

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVN12_RS05795
• Genome accession: NZ_CP128916
• Coordinates: 1187528..1188520 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM13770
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1182528..1193520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVN12_RS05765 (QVN12_05765)	ispD	1182589..1183299 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVN12_RS05770 (QVN12_05770)	ispF	1183299..1183778 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVN12_RS05775 (QVN12_05775)	truD	1183775..1184824 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QVN12_RS05780 (QVN12_05780)	surE	1184805..1185566 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QVN12_RS05785 (QVN12_05785)	pcm	1185560..1186186 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVN12_RS05790 (QVN12_05790)	nlpD	1186371..1187465 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QVN12_RS05795 (QVN12_05795)	rpoS	1187528..1188520 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVN12_RS05800 (QVN12_05800)	-	1188691..1189242 (-)	552	WP_001179444.1	flavodoxin family protein	-
QVN12_RS05805 (QVN12_05805)	-	1189467..1190510 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QVN12_RS05810 (QVN12_05810)	ygbN	1190653..1192017 (-)	1365	WP_000104433.1	GntP family transporter	-
QVN12_RS05815 (QVN12_05815)	ygbM	1192106..1192882 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=775835 QVN12_RS05795 WP_000081550.1 1187528..1188520(+) (rpoS) [Escherichia coli strain TUM13770]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=775835 QVN12_RS05795 WP_000081550.1 1187528..1188520(+) (rpoS) [Escherichia coli strain TUM13770]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715