Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PIC05_RS14650 Genome accession   NZ_CP116106
Coordinates   2995923..2996552 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DETEC-P829     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2990923..3001552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC05_RS14635 (PIC05_14635) helD 2991165..2993219 (-) 2055 WP_000420533.1 DNA helicase IV -
  PIC05_RS14640 (PIC05_14640) yccF 2993342..2993788 (+) 447 WP_001261231.1 YccF domain-containing protein -
  PIC05_RS14645 (PIC05_14645) yccS 2993798..2995960 (+) 2163 WP_000875044.1 YccS family putative transporter -
  PIC05_RS14650 (PIC05_14650) sxy/tfoX 2995923..2996552 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PIC05_RS14655 (PIC05_14655) sulA 2996771..2997280 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PIC05_RS14660 (PIC05_14660) ompA 2997637..2998689 (+) 1053 WP_000750419.1 porin OmpA -
  PIC05_RS14665 (PIC05_14665) matP 2998764..2999216 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  PIC05_RS14670 (PIC05_14670) ycbZ 2999402..3001162 (+) 1761 WP_000156520.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=775779 PIC05_RS14650 WP_000839153.1 2995923..2996552(-) (sxy/tfoX) [Escherichia coli strain DETEC-P829]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=775779 PIC05_RS14650 WP_000839153.1 2995923..2996552(-) (sxy/tfoX) [Escherichia coli strain DETEC-P829]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1