Detailed information NTG0775748

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QVN05_RS05665
• Genome accession: NZ_CP128912
• Coordinates: 1188397..1189389 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TUM13773
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1183397..1194389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVN05_RS05635 (QVN05_05635)	ispD	1183458..1184168 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QVN05_RS05640 (QVN05_05640)	ispF	1184168..1184647 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QVN05_RS05645 (QVN05_05645)	truD	1184644..1185693 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
QVN05_RS05650 (QVN05_05650)	surE	1185674..1186435 (+)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
QVN05_RS05655 (QVN05_05655)	pcm	1186429..1187055 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QVN05_RS05660 (QVN05_05660)	nlpD	1187240..1188334 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
QVN05_RS05665 (QVN05_05665)	rpoS	1188397..1189389 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QVN05_RS05670 (QVN05_05670)	-	1189560..1190111 (-)	552	WP_001179443.1	flavodoxin family protein	-
QVN05_RS05675 (QVN05_05675)	-	1190336..1191379 (+)	1044	WP_289942634.1	MBL fold metallo-hydrolase	-
QVN05_RS05680 (QVN05_05680)	ygbN	1191522..1192886 (-)	1365	WP_000104433.1	GntP family transporter	-
QVN05_RS05685 (QVN05_05685)	ygbM	1192975..1193751 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=775748 QVN05_RS05665 WP_000081550.1 1188397..1189389(+) (rpoS) [Escherichia coli strain TUM13773]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=775748 QVN05_RS05665 WP_000081550.1 1188397..1189389(+) (rpoS) [Escherichia coli strain TUM13773]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715